Gene/Protein Characteristic Table for
FXC01392
Species
human
Product ID
FXC01392
Linker Type
Cloning Site
SgfI-PmeI
Gene
KIBB4380
Description
somatostatin receptor 1
Original Clone ID
fh23275
Length: 1173 bp
Restriction map A
Restriction map B
Genomic Structure
-
Length: 391 aa
Result of homology search against nr database (
FASTA output,
Multiple alignment)
Entry Exp ID% Protein Source P30872 1.4e-144 100.0 Somatostatin re... Homo sapiens AAV38727 1.4e-144 100.0 somatostatin re... synthetic construct XP_001091300 6.3e-144 99.7 somatostatin re... Macaca mulatta NP_001025492 1.4e-143 99.7 somatostatin re... Bos taurus XP_001492647 3.2e-143 99.4 similar to Soma... Equus caballus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
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Result of InterProScan
Search method interpro_ID From To Entry Definition FPrintScan IPR001116 17 36 PR00587 Somatostatin receptor IPR001116 37 56 PR00587 Somatostatin receptor IPR000586 57 69 PR00246 Somatostatin receptor IPR000276 60 84 PR00237 Rhodopsin-like GPCR superfamily IPR000276 93 114 PR00237 Rhodopsin-like GPCR superfamily IPR000586 112 120 PR00246 Somatostatin receptor IPR000586 131 140 PR00246 Somatostatin receptor IPR000276 137 159 PR00237 Rhodopsin-like GPCR superfamily IPR000276 173 194 PR00237 Rhodopsin-like GPCR superfamily IPR001116 195 213 PR00587 Somatostatin receptor IPR000276 224 247 PR00237 Rhodopsin-like GPCR superfamily IPR000586 248 257 PR00246 Somatostatin receptor IPR000586 258 271 PR00246 Somatostatin receptor IPR000276 269 293 PR00237 Rhodopsin-like GPCR superfamily IPR000586 291 299 PR00246 Somatostatin receptor IPR001116 295 312 PR00587 Somatostatin receptor IPR000276 305 331 PR00237 Rhodopsin-like GPCR superfamily IPR000586 325 337 PR00246 Somatostatin receptor IPR001116 340 360 PR00587 Somatostatin receptor IPR001116 361 380 PR00587 Somatostatin receptor HMMPfam IPR000276 75 323 PF00001 Rhodopsin-like GPCR superfamily ProfileScan IPR000276 75 323 PS50262 Rhodopsin-like GPCR superfamily ScanRegExp IPR000276 143 159 PS00237 Rhodopsin-like GPCR superfamily
Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length SOSUI2 1 58 AILISFIYSVVCLVGLCGNSMVI 80 PRIMARY 23 2 95 IYILNLAIADELLMLSVPFLVTS 117 SECONDARY 23 3 129 LCRLVLSVDAVNMFTSIYCLTVL 151 PRIMARY 23 4 182 WVLSLLVILPIVVFSRTAANSDG 204 SECONDARY 23 5 227 TFLMGFLLPVGAICLCYVLIIAK 249 PRIMARY 23 6 272 MVMMVVMVFVICWMPFYVVQLVN 294 PRIMARY 23 7 304 VSQLSVILGYANSCANPILYGFL 326 SECONDARY 23
Result of homology search against disease genes in OMIM database
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_001040 391 182451 100.0 100.0 NP_001043 388 182454 83.4 89.5 NP_001044 364 102200,182455 75.6 87.2 NP_001042 418 182453 75.9 82.1 NP_000905 400 600018,600669 67.6 93.4 Inquiries or Suggestions ?
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