LDB3 ORF clone FXC00575

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Flexi ORF Clone FXC00575

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Clone info.

Species

human

Clone Name

pF1KSDA0613 Sequence (with vector) Restriction Map

Product ID

FXC00575

HaloTag Clone PID

FHC00575

ORF Sequence

DNA sequence (2181 bp)
Protein sequence (727 aa)

Linker Type

Flexi_RBS type

more Linker info

Vector Type

pF1KM Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB383921]

Gene

KIAA0613

Symbol

LDB3

Alias : CMD1C, CMH24, CMPD3, CYPHER, LDB3Z1, LDB3Z4, LVNC3, MFM4, ORACLE, PDLIM6, ZASP

Description

LIM domain binding 3, transcript variant 1

Original Clone ID

hg01088b

Features of the cloned ORF sequence

Description

Length: 2181 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 727 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS7377.1 3e-102 100.0 LDB3 CCDS53550.1 1.2e-83 83.5 LDB3 CCDS41544.1 7.7e-52 77.7 LDB3 CCDS44450.1 1.9e-37 98.7 LDB3 CCDS53549.1 4.6e-28 80.6 LDB3 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition FPrintScan NULL 351 363 PR01217 NULL NULL 411 423 PR01217 NULL NULL 431 452 PR01217 NULL NULL 452 468 PR01217 NULL NULL 471 488 PR01217 NULL HMMPfam IPR001478 9 81 PF00595 PDZ/DHR/GLGF IPR001781 551 604 PF00412 Zinc finger IPR001781 610 664 PF00412 Zinc finger IPR001781 669 721 PF00412 Zinc finger HMMSmart IPR001478 11 84 SM00228 PDZ/DHR/GLGF IPR006643 189 214 SM00735 ZASP IPR001781 550 601 SM00132 Zinc finger IPR001781 609 660 SM00132 Zinc finger IPR001781 668 721 SM00132 Zinc finger ProfileScan IPR001478 1 84 PS50106 PDZ/DHR/GLGF IPR001781 549 607 PS50023 Zinc finger IPR001781 608 667 PS50023 Zinc finger IPR001781 668 727 PS50023 Zinc finger
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_009009 727 605906,609452 100.0 100.0 XP_005269521 727 605906,609452 100.0 100.0 NP_001165081 732 605906,609452 83.5 100.0 XP_011537488 795 605906,609452 91.0 95.0 XP_011537492 680 605906,609452 86.4 100.0 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pF1KSDA0613 Download

>KIAA0613  2181 bp
ATGTCTTACAGTGTGACCCTGACTGGGCCCGGGCCCTGGGGCTTCCGTCTGCAGGGGGGC
AAGGACTTCAACATGCCCCTCACTATCTCCCGGATCACACCAGGCAGCAAGGCAGCCCAG
TCCCAGCTCAGCCAGGGTGACCTCGTGGTGGCCATTGACGGCGTCAACACAGACACCATG
ACCCACCTGGAAGCCCAGAACAAGATCAAGTCTGCCAGCTACAACTTGAGCCTCACCCTG
CAGAAATCAAAGCGTCCCATTCCCATCTCCACGACAGCACCTCCAGTCCAGACCCCTCTG
CCGGTGATCCCTCACCAGAAGGACCCCGCTCTGGACACGAACGGCAGCCTGGTGGCACCC
AGCCCCAGCCCTGAGGCGAGGGCCAGCCCAGGCACCCCAGGCACCCCGGAGCTCAGGCCC
ACCTTTAGCCCTGCCTTCTCCCGGCCCTCCGCCTTCTCCTCACTCGCCGAGGCCTCTGAC
CCTGGCCCTCCGCGGGCCAGCCTGAGGGCCAAGACCAGCCCAGAGGGGGCCCGGGACCTA
CTCGGCCCAAAAGCCCTGCCGGGCTCGAGCCAGCCGAGGCAATATAACAACCCCATTGGC
CTGTACTCGGCAGAGACCCTGAGGGAGATGGCTCAGATGTACCAGATGAGCCTCCGAGGG
AAGGCCTCGGGTGTCGGACTCCCAGGAGGGAGCCTCCCTATTAAGGACCTTGCCGTAGAC
AGCGCCTCTCCCGTCTACCAGGCTGTGATTAAGAGCCAGAACAAGCCAGAAGATGAGGCT
GACGAGTGGGCACGCCGTTCCTCCAACCTGCAGTCTCGCTCCTTCCGCATCCTGGCCCAG
ATGACGGGGACAGAATTCATGCAAGACCCTGATGAAGAAGCTCTGCGAAGGTCAAGCACC
CCTATTGAGCATGCGCCGGTGTGCACCAGCCAGGCCACCACCCCGCTGCTGCCCGCTTCT
GCCCAGCCACCTGCTGCTGCCTCTCCCAGTGCGGCTTCGCCACCCCTGGCCACAGCTGCT
GCCCACACTGCCATCGCCTCCGCCTCCACCACAGCCCCTGCTTCAAGTCCTGCCGACAGC
CCAAGGCCCCAGGCCTCTTCCTACAGCCCCGCAGTGGCCGCCTCTTCAGCACCTGCCACC
CACACCAGCTACAGTGAGGGCCCCGCCGCCCCTGCACCCAAGCCCCGGGTTGTCACCACT
GCCAGCATCCGGCCTTCTGTCTACCAGCCAGTGCCTGCATCTACCTACAGCCCGTCCCCA
GGGGCCAATTACAGTCCCACTCCCTACACCCCCTCCCCTGCCCCTGCCTACACCCCCTCC
CCTGCCCCTGCCTACACCCCCTCACCTGTCCCCACCTACACTCCATCCCCAGCACCAGCC
TATACCCCCTCACCTGCCCCCAACTATAACCCTGCACCCTCGGTGGCCTACAGCGGGGGC
CCTGCGGAGCCTGCCAGCCGTCCACCCTGGGTGACAGATGATAGCTTCTCCCAGAAGTTT
GCCCCGGGCAAGAGCACCACCTCCATCAGCAAGCAGACCCTGCCCCGGGGAGGCCCAGCC
TACACCCCAGCGGGTCCTCAGGTGCCACCACTTGCCAGGGGGACCGTCCAGAGGGCTGAG
CGATTCCCAGCCAGCAGCCGGACTCCACTCTGCGGTCACTGCAACAATGTCATCCGGGGC
CCATTTCTGGTAGCCATGGGCCGTTCTTGGCACCCTGAAGAGTTCACCTGTGCCTACTGC
AAGACTTCCCTGGCAGATGTGTGCTTTGTGGAAGAGCAGAACAACGTTTACTGTGAGCGA
TGTTATGAGCAATTCTTTGCCCCGCTGTGTGCCAAGTGCAACACCAAAATTATGGGGGAA
GTAATGCATGCCTTGAGACAGACATGGCACACCACCTGCTTCGTCTGTGCGGCCTGCAAG
AAGCCTTTTGGGAACAGCCTCTTCCACATGGAAGACGGGGAGCCCTACTGCGAGAAAGAC
TACATCAATCTGTTCAGCACCAAGTGCCATGGCTGCGATTTCCCCGTGGAGGCTGGCGAC
AAGTTTATCGAAGCCCTGGGCCACACTTGGCACGACACCTGCTTCATTTGCGCAGTCTGC
CATGTGAATCTGGAGGGGCAGCCGTTCTACTCCAAGAAGGACAGACCCCTGTGCAAGAAG
CACGCACACACCATCAACTTG

ORF Protein

Cloned ORF protein sequence for pF1KSDA0613 Download

>KIAA0613  727 aa
MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTM
THLEAQNKIKSASYNLSLTLQKSKRPIPISTTAPPVQTPLPVIPHQKDPALDTNGSLVAP
SPSPEARASPGTPGTPELRPTFSPAFSRPSAFSSLAEASDPGPPRASLRAKTSPEGARDL
LGPKALPGSSQPRQYNNPIGLYSAETLREMAQMYQMSLRGKASGVGLPGGSLPIKDLAVD
SASPVYQAVIKSQNKPEDEADEWARRSSNLQSRSFRILAQMTGTEFMQDPDEEALRRSST
PIEHAPVCTSQATTPLLPASAQPPAAASPSAASPPLATAAAHTAIASASTTAPASSPADS
PRPQASSYSPAVAASSAPATHTSYSEGPAAPAPKPRVVTTASIRPSVYQPVPASTYSPSP
GANYSPTPYTPSPAPAYTPSPAPAYTPSPVPTYTPSPAPAYTPSPAPNYNPAPSVAYSGG
PAEPASRPPWVTDDSFSQKFAPGKSTTSISKQTLPRGGPAYTPAGPQVPPLARGTVQRAE
RFPASSRTPLCGHCNNVIRGPFLVAMGRSWHPEEFTCAYCKTSLADVCFVEEQNNVYCER
CYEQFFAPLCAKCNTKIMGEVMHALRQTWHTTCFVCAACKKPFGNSLFHMEDGEPYCEKD
YINLFSTKCHGCDFPVEAGDKFIEALGHTWHDTCFICAVCHVNLEGQPFYSKKDRPLCKK
HAHTINL

ORF+Vector

Nucleotide Sequence (with vector) for pF1KSDA0613 Download

>pF1KSDA0613  5320 bp
GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA
TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCTTTCGAAGGAGAT
AGAACCATGTCTTACAGTGTGACCCTGACTGGGCCCGGGCCCTGGGGCTTCCGTCTGCAG
GGGGGCAAGGACTTCAACATGCCCCTCACTATCTCCCGGATCACACCAGGCAGCAAGGCA
GCCCAGTCCCAGCTCAGCCAGGGTGACCTCGTGGTGGCCATTGACGGCGTCAACACAGAC
ACCATGACCCACCTGGAAGCCCAGAACAAGATCAAGTCTGCCAGCTACAACTTGAGCCTC
ACCCTGCAGAAATCAAAGCGTCCCATTCCCATCTCCACGACAGCACCTCCAGTCCAGACC
CCTCTGCCGGTGATCCCTCACCAGAAGGACCCCGCTCTGGACACGAACGGCAGCCTGGTG
GCACCCAGCCCCAGCCCTGAGGCGAGGGCCAGCCCAGGCACCCCAGGCACCCCGGAGCTC
AGGCCCACCTTTAGCCCTGCCTTCTCCCGGCCCTCCGCCTTCTCCTCACTCGCCGAGGCC
TCTGACCCTGGCCCTCCGCGGGCCAGCCTGAGGGCCAAGACCAGCCCAGAGGGGGCCCGG
GACCTACTCGGCCCAAAAGCCCTGCCGGGCTCGAGCCAGCCGAGGCAATATAACAACCCC
ATTGGCCTGTACTCGGCAGAGACCCTGAGGGAGATGGCTCAGATGTACCAGATGAGCCTC
CGAGGGAAGGCCTCGGGTGTCGGACTCCCAGGAGGGAGCCTCCCTATTAAGGACCTTGCC
GTAGACAGCGCCTCTCCCGTCTACCAGGCTGTGATTAAGAGCCAGAACAAGCCAGAAGAT
GAGGCTGACGAGTGGGCACGCCGTTCCTCCAACCTGCAGTCTCGCTCCTTCCGCATCCTG
GCCCAGATGACGGGGACAGAATTCATGCAAGACCCTGATGAAGAAGCTCTGCGAAGGTCA
AGCACCCCTATTGAGCATGCGCCGGTGTGCACCAGCCAGGCCACCACCCCGCTGCTGCCC
GCTTCTGCCCAGCCACCTGCTGCTGCCTCTCCCAGTGCGGCTTCGCCACCCCTGGCCACA
GCTGCTGCCCACACTGCCATCGCCTCCGCCTCCACCACAGCCCCTGCTTCAAGTCCTGCC
GACAGCCCAAGGCCCCAGGCCTCTTCCTACAGCCCCGCAGTGGCCGCCTCTTCAGCACCT
GCCACCCACACCAGCTACAGTGAGGGCCCCGCCGCCCCTGCACCCAAGCCCCGGGTTGTC
ACCACTGCCAGCATCCGGCCTTCTGTCTACCAGCCAGTGCCTGCATCTACCTACAGCCCG
TCCCCAGGGGCCAATTACAGTCCCACTCCCTACACCCCCTCCCCTGCCCCTGCCTACACC
CCCTCCCCTGCCCCTGCCTACACCCCCTCACCTGTCCCCACCTACACTCCATCCCCAGCA
CCAGCCTATACCCCCTCACCTGCCCCCAACTATAACCCTGCACCCTCGGTGGCCTACAGC
GGGGGCCCTGCGGAGCCTGCCAGCCGTCCACCCTGGGTGACAGATGATAGCTTCTCCCAG
AAGTTTGCCCCGGGCAAGAGCACCACCTCCATCAGCAAGCAGACCCTGCCCCGGGGAGGC
CCAGCCTACACCCCAGCGGGTCCTCAGGTGCCACCACTTGCCAGGGGGACCGTCCAGAGG
GCTGAGCGATTCCCAGCCAGCAGCCGGACTCCACTCTGCGGTCACTGCAACAATGTCATC
CGGGGCCCATTTCTGGTAGCCATGGGCCGTTCTTGGCACCCTGAAGAGTTCACCTGTGCC
TACTGCAAGACTTCCCTGGCAGATGTGTGCTTTGTGGAAGAGCAGAACAACGTTTACTGT
GAGCGATGTTATGAGCAATTCTTTGCCCCGCTGTGTGCCAAGTGCAACACCAAAATTATG
GGGGAAGTAATGCATGCCTTGAGACAGACATGGCACACCACCTGCTTCGTCTGTGCGGCC
TGCAAGAAGCCTTTTGGGAACAGCCTCTTCCACATGGAAGACGGGGAGCCCTACTGCGAG
AAAGACTACATCAATCTGTTCAGCACCAAGTGCCATGGCTGCGATTTCCCCGTGGAGGCT
GGCGACAAGTTTATCGAAGCCCTGGGCCACACTTGGCACGACACCTGCTTCATTTGCGCA
GTCTGCCATGTGAATCTGGAGGGGCAGCCGTTCTACTCCAAGAAGGACAGACCCCTGTGC
AAGAAGCACGCACACACCATCAACTTGTACGTAGTTTAAACGAATTCGAGCTCGGTACCC
GGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCG
AAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATAACCCCTTGGGGC
CTCTAAACGGGTCTTGAGGGGTTTTTTGCTGAAAGGAGGAACTATATCCGGTTCGCTTGC
TGTCCATAAAACCGCCCAGTCTAGCTATCGCCATGTAAGCCCACTGCAAGCTACCTGCTT
TCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGG
TCAGCACCGTTTCTGCGGACTGGCTTTCTACGTGTTCCGCTTCCTTTAGCAGCCCTTGCG
CCCTGAGTGCTTGCGGCAGCGTGAGCTTCAAAAGAATTGCCAGCTGGGGCGCCCTCTGGT
AAGGTTGGGAAGCCCTGCAAAGTAAACTGGATGGCTTTCTTGCCGCCAAGGATCTGATGG
CGCAGGGGATCAAGATCTGATCAAGAGACAGGATGACGGTCGTTTCGCATGCTTGAACAA
GATGGATTGCACGCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGG
GCACAACAGACAATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGC
CCGGTTCTTTTTGTCAAGACCGACCTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCA
GCGCGGCTATCGTGGCTGGCCACGACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTC
ACTGAAGCGGGAAGGGACTGGCTGCTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCA
TCTCACCTTGCTCCTGCCGAGAAAGTATCCATCATGGCTGATGCAATGCGGCGGCTGCAT
ACGCTTGATCCGGCTACCTGCCCATTCGACCACCAAGCGAAACATCGCATCGAGCGAGCA
CGCACTCGGATGGAAGCCGGTCTTGTCGATCAGGATGATCTGGACGAAGAGCATCAGGGG
CTCGCGCCAGCCGAACTGTTCGCCAGGCTCAAGGCGCGTATGCCGGATGGTGAGGATCTC
GTCGTGACTCATGGCGATGCCTGCTTGCCGAATATCATGGTGGAAAATGGCCGCTTTTCT
GGATTCATCGACTGTGGCCGGCTGGGTGTGGCGGACCGCTATCAGGACATAGCGTTGGCT
ACCCGTGATATTGCTGAAGAGCTTGGCGGCGAATGGGCTGACCGCTTCCTCGTGCTTTAC
GGTATCGCCGCTCCCGATTCGCAGCGCATCGCCTTCTATCGCCTTCTTGACGAGTTCTTC
TGAGCGGGACTCTGGGGTTCGCGAAATGACCGACCAAGCGACGCCCAACCGGTATCAGCT
CACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCAGGAAAGAACATG
TGAGCAAAAGGCCAGCAAAAGGCCAGGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTC
CATAGGCTCCGCCCCCCTGACGAGCATCACAAAAATCGACGCTCAAGTCAGAGGTGGCGA
AACCCGACAGGACTATAAAGATACCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCT
CCTGTTCCGACCCTGCCGCTTACCGGATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTG
GCGCTTTCTCATAGCTCACGCTGTAGGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAG
CTGGGCTGTGTGCACGAACCCCCCGTTCAGCCCGACCGCTGCGCCTTATCCGGTAACTAT
CGTCTTGAGTCCAACCCGGTAAGACACGACTTATCGCCACTGGCAGCAGCCACTGGTAAC
AGGATTAGCAGAGCGAGGTATGTAGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAAC
TACGGCTACACTAGAAGGACAGTATTTGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTC
GGAAAAAGAGTTGGTAGCTCTTGATCCGGCAAACAAACCACCGCTGGTAGCGGTGGTTTT
TTTGTTTGCAAGCAGCAGATTACGCGCAGAAAAAAAGGATTTCAAGAAGATCCTTTGATC
TTTTCTACGGGGTCTGACGCTCAGTGGAACGAAAACTCACGTTAAGGGATTTTGGTCATG
AGATTATCAAAAAGGATCTTCACCTAGATCCTTTTATAGTCCGGAAATACAGGAACGCAC
GCTGGATGGCCCTTCGCTGGGATGGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTAA
GTGGGGGTAATGTGGCCTGTACCCTCTGGTTGCATAGGTATTCATACGGTTAAAATTTAT
CAGGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCG
TGATCGCGCTGAACGCGTTTTAGCGGTGCGTACAATTAAGGGATTATGGTAAATCCACTT
ACTGTCTGCCCTCGTAGCCATCGAGATAAACCGCAGTACTCCGGCCACGATGCGTCCGGC
GTAGAGGATCGAGATCTTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTG
ATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAAC
TCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGG
AACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTAT
CTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAA
CGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCA
TCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTTT
GTTTATTTTTCTAAATACATTCAAATATGTATCCGCTCAT