-
SpecieshumanProduct IDFXC00429Cloning SiteSgfI-PmeISymbolSCARF1
Alias : SREC, SREC-I, SREC1Descriptionscavenger receptor class F, member 1, transcript variant 1
Length: 2490 bp
Restriction map A
Restriction map B
Genomic Structure
-
Length: 830 aa
Result of homology search against CCDS protein database (
FASTA output,
Multiple alignment)
Entry Exp ID% symbol CCDS11007.1 3.3e-183 99.5 SCARF1 CCDS45564.1 4.6e-116 99.0 SCARF1 CCDS13779.2 3.4e-63 40.3 SCARF2 CCDS46666.1 2e-62 40.6 SCARF2 CCDS10213.2 1.3e-25 35.8 MEGF11
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
[ zoom out (x2) ]
Result of InterProScan
Search method interpro_ID From To Entry Definition FPrintScan NULL 111 129 PR00011 NULL NULL 172 190 PR00011 NULL NULL 230 248 PR00011 NULL HMMPfam IPR002049 103 130 PF00053 EGF-like IPR002049 163 191 PF00053 EGF-like HMMSmart IPR006210 51 87 SM00181 Epidermal growth factor-like IPR006210 98 130 SM00181 Epidermal growth factor-like IPR006210 132 160 SM00181 Epidermal growth factor-like IPR006210 162 191 SM00181 Epidermal growth factor-like IPR006210 195 220 SM00181 Epidermal growth factor-like IPR006210 224 249 SM00181 Epidermal growth factor-like IPR006210 260 294 SM00181 Epidermal growth factor-like IPR006210 305 339 SM00181 Epidermal growth factor-like IPR006210 350 395 SM00181 Epidermal growth factor-like ProfileScan IPR000742 53 87 PS50026 Epidermal growth factor-like IPR000742 95 130 PS50026 Epidermal growth factor-like IPR000742 215 249 PS50026 Epidermal growth factor-like
Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length SOSUI2 1 1 MGLGLLLPLLLLWTRGTQ 18 SECONDARY 18 2 423 LIVGSLVPLLLLFLGLACCACCC 445 PRIMARY 23
Result of homology search against disease genes in OMIM database(FASTA output,
Multiple alignment)
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_003684 830 607873 99.5 100.0 NP_699165 871 600920,613619 40.3 99.2 NP_878315 866 600920,613619 40.6 99.2 Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.comCloned ORF Nucleotide sequence for pF1KSDA0149 Download>KIAA0149 2490 bp ATGGGGCTGGGGCTGCTGCTCCCGCTGCTGCTGCTCTGGACTCGGGGGACTCAGGGGTCC GAGCTGGACCCCAAAGGGCAGCACGTCTGTGTGGCCAGCAGCCCCTCTGCTGAGCTGCAG TGCTGCGCAGGCTGGAGGCAGAAGGATCAAGAATGCACCATCCCCATCTGTGAGGGGCCG GACGCCTGCCAGAAAGACGAGGTGTGTGTGAAGCCGGGCCTCTGTCGATGCAAGCCTGGA TTCTTTGGGGCCCACTGCAGCTCCCGCTGCCCGGGCCAGTACTGGGGCCCCGACTGCCGT GAGAGCTGCCCCTGCCACCCGCACGGCCAGTGCGAGCCAGCCACGGGCGCGTGCCAGTGC CAGGCCGACCGCTGGGGAGCCCGCTGCGAGTTCCCGTGCGCCTGCGGCCCCCACGGGCGC TGCGACCCCGCGACCGGCGTGTGCCACTGCGAACCCGGCTGGTGGTCGTCCACGTGCCGC CGCCCGTGCCAGTGCAACACCGCGGCGGCGCGCTGCGAGCAGGCCACGGGCGCCTGCGTG TGCAAGCCGGGCTGGTGGGGGCGCCGCTGCAGCTTCCGCTGCAACTGCCACGGCTCCCCG TGCGAGCAGGACTCCGGCCGCTGCGCCTGCCGGCCGGGCTGGTGGGGTCCCGAATGCCAG CAGCAGTGCGAGTGTGTGCGGGGCCGCTGCAGCGCCGCCTCCGGCGAGTGCACCTGCCCG CCCGGCTTCCGCGGAGCGCGCTGCGAGCTGCCCTGCCCGGCAGGCAGCCACGGGGTGCAG TGCGCACACAGCTGTGGCCGCTGCAAACACAATGAGCCGTGCTCTCCAGACACAGGCAGC TGTGAGTCCTGCGAGCCGGGCTGGAACGGGACCCAGTGCCAGCAGCCCTGCCTGCCTGGC ACCTTTGGCGAGAGCTGCGAACAGCAGTGCCCTCACTGCCGACATGGGGAGGCCTGTGAG CCAGATACTGGCCACTGTCAGCGCTGTGACCCTGGCTGGCTGGGGCCCAGGTGTGAAGAC CCCTGCCCCACTGGTACCTTTGGGGAAGACTGTGGCTCTACCTGCCCCACCTGTGTTCAG GGGTCCTGTGATACTGTGACAGGGGACTGTGTCTGCAGTGCCGGCTACTGGGGGCCCAGC TGCAACGCCTCCTGCCCAGCCGGTTTCCATGGAAACAACTGCTCAGTTCCTTGTGAATGC CCAGAGGGACTCTGCCACCCTGTCTCTGGGTCCTGCCAGCCAGGCTCTGGCAGTCGGGAC ACTGCCCTCATCGTGGGCAGCCTTGTGCCTCTGCTGCTGCTCTTCCTGGGCCTTGCCTGC TGTGCCTGCTGCTGCTGGGCCCCCCGATCAGACCTCAAGGACAGGCCAGCGAGAGATGGA GCTACCGTGTCCAGGATGAAGCTGCAGGTCTGGGGGACACTGACCAGCTTGGGCTCCACG CTGCCCTGCCGTTCCCTCAGCTCCCACAAGCTACCCTGGGTGACAGTCTCACATCACGAC CCGGAGGTCCCCTTCAACCACAGCTTCATCGAGCCGCCCTCTGCCGGCTGGGCCACTGAT GACTCCTTCTCATCCGATCCTGAGTCTGGAGAGGCAGATGAGGTTCCTGCCTACTGTGTG CCACCCCAAGAAGGGATGGTCCCTGTGGCCCAGGCAGGGTCGTCAGAGGCCAGCCTGGCT GCAGGTGCTTTCCCGCCCCCTGAGGACGCCTCCACGCCATTCGCCATCCCGCGCACCTCC AGCCTAGCTCGGGCCAAGCGGCCATCGGTCTCCTTCGCGGAAGGTACCAAGTTTGCACCA CAGAGTCGCCGAAGCTCAGGGGAGCTCTCCAGCCCGCTCCGAAAGCCCAAGAGGCTCTCC CGGGGGGCGCAGTCGGGTCCTGAGGGCCGGGAAGCCGAAGAGTCCACAGGCCCAGACGAA GCAGAAGCCCCCGAGTCCTTTCCGGCGGCTGCCAGTCCCGGGGATTCAGCCACTGGCCAC CGGTGGCCCCCACTTGGTAGCCGGACAGTGGCTGAGCACGTGGAAGCCATTGAGGGCAGC GTCCAGGAGAGCTCGGGCCCTGTGACCACGATCTACATGCTGGCAGGGAAGCCCCGCGGA TCCGAAGGCCCTGTCCGCTCTGTCTTCCGCCATTTTGGTAGCTTCCAGAAAGGCCAGGCG GAAGCCAAGGTCAAGAGGGCCATCCCTAAGCCTCCGCGCCAGGCCCTGAATCGGAAAAAG GGCAGCCCTGGCCTTGCCTCTGGCTCTGTCGGCCAGAGCCCCAACTCAGCCCCAAAAGCT GGGCTTCCTGGGGCCACAGGGCCTATGGCAGTCAGACCAGAGGAAGCGGTCCGGGGGCTG GGGGCTGGCACCGAGAGTTCAAGGAGAGCCCAGGAGCCAGTCTCTGGCTGTGGCTCCCCA GAACAGGATCCCCAGAAGCAGGCTGAAGAGGAAAGGCAGGAGGAACCTGAGTATGAGAAT GTTGTACCCATCTCCAGGCCACCAGAACCC
Cloned ORF protein sequence for pF1KSDA0149 Download>KIAA0149 830 aa MGLGLLLPLLLLWTRGTQGSELDPKGQHVCVASSPSAELQCCAGWRQKDQECTIPICEGP DACQKDEVCVKPGLCRCKPGFFGAHCSSRCPGQYWGPDCRESCPCHPHGQCEPATGACQC QADRWGARCEFPCACGPHGRCDPATGVCHCEPGWWSSTCRRPCQCNTAAARCEQATGACV CKPGWWGRRCSFRCNCHGSPCEQDSGRCACRPGWWGPECQQQCECVRGRCSAASGECTCP PGFRGARCELPCPAGSHGVQCAHSCGRCKHNEPCSPDTGSCESCEPGWNGTQCQQPCLPG TFGESCEQQCPHCRHGEACEPDTGHCQRCDPGWLGPRCEDPCPTGTFGEDCGSTCPTCVQ GSCDTVTGDCVCSAGYWGPSCNASCPAGFHGNNCSVPCECPEGLCHPVSGSCQPGSGSRD TALIVGSLVPLLLLFLGLACCACCCWAPRSDLKDRPARDGATVSRMKLQVWGTLTSLGST LPCRSLSSHKLPWVTVSHHDPEVPFNHSFIEPPSAGWATDDSFSSDPESGEADEVPAYCV PPQEGMVPVAQAGSSEASLAAGAFPPPEDASTPFAIPRTSSLARAKRPSVSFAEGTKFAP QSRRSSGELSSPLRKPKRLSRGAQSGPEGREAEESTGPDEAEAPESFPAAASPGDSATGH RWPPLGSRTVAEHVEAIEGSVQESSGPVTTIYMLAGKPRGSEGPVRSVFRHFGSFQKGQA EAKVKRAIPKPPRQALNRKKGSPGLASGSVGQSPNSAPKAGLPGATGPMAVRPEEAVRGL GAGTESSRRAQEPVSGCGSPEQDPQKQAEEERQEEPEYENVVPISRPPEP
Nucleotide Sequence (with vector) for pF1KSDA0149 Download>pF1KSDA0149 5627 bp GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCTTTCGAAGGAGAT AGAACCATGGGGCTGGGGCTGCTGCTCCCGCTGCTGCTGCTCTGGACTCGGGGGACTCAG GGGTCCGAGCTGGACCCCAAAGGGCAGCACGTCTGTGTGGCCAGCAGCCCCTCTGCTGAG CTGCAGTGCTGCGCAGGCTGGAGGCAGAAGGATCAAGAATGCACCATCCCCATCTGTGAG GGGCCGGACGCCTGCCAGAAAGACGAGGTGTGTGTGAAGCCGGGCCTCTGTCGATGCAAG CCTGGATTCTTTGGGGCCCACTGCAGCTCCCGCTGCCCGGGCCAGTACTGGGGCCCCGAC TGCCGTGAGAGCTGCCCCTGCCACCCGCACGGCCAGTGCGAGCCAGCCACGGGCGCGTGC CAGTGCCAGGCCGACCGCTGGGGAGCCCGCTGCGAGTTCCCGTGCGCCTGCGGCCCCCAC GGGCGCTGCGACCCCGCGACCGGCGTGTGCCACTGCGAACCCGGCTGGTGGTCGTCCACG TGCCGCCGCCCGTGCCAGTGCAACACCGCGGCGGCGCGCTGCGAGCAGGCCACGGGCGCC TGCGTGTGCAAGCCGGGCTGGTGGGGGCGCCGCTGCAGCTTCCGCTGCAACTGCCACGGC TCCCCGTGCGAGCAGGACTCCGGCCGCTGCGCCTGCCGGCCGGGCTGGTGGGGTCCCGAA TGCCAGCAGCAGTGCGAGTGTGTGCGGGGCCGCTGCAGCGCCGCCTCCGGCGAGTGCACC TGCCCGCCCGGCTTCCGCGGAGCGCGCTGCGAGCTGCCCTGCCCGGCAGGCAGCCACGGG GTGCAGTGCGCACACAGCTGTGGCCGCTGCAAACACAATGAGCCGTGCTCTCCAGACACA GGCAGCTGTGAGTCCTGCGAGCCGGGCTGGAACGGGACCCAGTGCCAGCAGCCCTGCCTG CCTGGCACCTTTGGCGAGAGCTGCGAACAGCAGTGCCCTCACTGCCGACATGGGGAGGCC TGTGAGCCAGATACTGGCCACTGTCAGCGCTGTGACCCTGGCTGGCTGGGGCCCAGGTGT GAAGACCCCTGCCCCACTGGTACCTTTGGGGAAGACTGTGGCTCTACCTGCCCCACCTGT GTTCAGGGGTCCTGTGATACTGTGACAGGGGACTGTGTCTGCAGTGCCGGCTACTGGGGG CCCAGCTGCAACGCCTCCTGCCCAGCCGGTTTCCATGGAAACAACTGCTCAGTTCCTTGT GAATGCCCAGAGGGACTCTGCCACCCTGTCTCTGGGTCCTGCCAGCCAGGCTCTGGCAGT CGGGACACTGCCCTCATCGTGGGCAGCCTTGTGCCTCTGCTGCTGCTCTTCCTGGGCCTT GCCTGCTGTGCCTGCTGCTGCTGGGCCCCCCGATCAGACCTCAAGGACAGGCCAGCGAGA GATGGAGCTACCGTGTCCAGGATGAAGCTGCAGGTCTGGGGGACACTGACCAGCTTGGGC TCCACGCTGCCCTGCCGTTCCCTCAGCTCCCACAAGCTACCCTGGGTGACAGTCTCACAT CACGACCCGGAGGTCCCCTTCAACCACAGCTTCATCGAGCCGCCCTCTGCCGGCTGGGCC ACTGATGACTCCTTCTCATCCGATCCTGAGTCTGGAGAGGCAGATGAGGTTCCTGCCTAC TGTGTGCCACCCCAAGAAGGGATGGTCCCTGTGGCCCAGGCAGGGTCGTCAGAGGCCAGC CTGGCTGCAGGTGCTTTCCCGCCCCCTGAGGACGCCTCCACGCCATTCGCCATCCCGCGC ACCTCCAGCCTAGCTCGGGCCAAGCGGCCATCGGTCTCCTTCGCGGAAGGTACCAAGTTT GCACCACAGAGTCGCCGAAGCTCAGGGGAGCTCTCCAGCCCGCTCCGAAAGCCCAAGAGG CTCTCCCGGGGGGCGCAGTCGGGTCCTGAGGGCCGGGAAGCCGAAGAGTCCACAGGCCCA GACGAAGCAGAAGCCCCCGAGTCCTTTCCGGCGGCTGCCAGTCCCGGGGATTCAGCCACT GGCCACCGGTGGCCCCCACTTGGTAGCCGGACAGTGGCTGAGCACGTGGAAGCCATTGAG GGCAGCGTCCAGGAGAGCTCGGGCCCTGTGACCACGATCTACATGCTGGCAGGGAAGCCC CGCGGATCCGAAGGCCCTGTCCGCTCTGTCTTCCGCCATTTTGGTAGCTTCCAGAAAGGC CAGGCGGAAGCCAAGGTCAAGAGGGCCATCCCTAAGCCTCCGCGCCAGGCCCTGAATCGG AAAAAGGGCAGCCCTGGCCTTGCCTCTGGCTCTGTCGGCCAGAGCCCCAACTCAGCCCCA AAAGCTGGGCTTCCTGGGGCCACAGGGCCTATGGCAGTCAGACCAGAGGAAGCGGTCCGG GGGCTGGGGGCTGGCACCGAGAGTTCAAGGAGAGCCCAGGAGCCAGTCTCTGGCTGTGGC TCCCCAGAACAGGATCCCCAGAAGCAGGCTGAAGAGGAAAGGCAGGAGGAACCTGAGTAT GAGAATGTTGTACCCATCTCCAGGCCACCAGAACCCTACGTAGTTTAAACGAATTCGAGC TCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTAA CAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATAACC CCTTGGGGCCTCTAAACGGGTCTTGAGGGGTTTTTTGCTGAAAGGAGGAACTATATCCGG TTCGCTTGCTGTCCATAAAACCGCCCAGTCTAGCTATCGCCATGTAAGCCCACTGCAAGC TACCTGCTTTCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCTGACATT CATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTACGTGTTCCGCTTCCTTTAGCA GCCCTTGCGCCCTGAGTGCTTGCGGCAGCGTGAGCTTCAAAAGAATTGCCAGCTGGGGCG CCCTCTGGTAAGGTTGGGAAGCCCTGCAAAGTAAACTGGATGGCTTTCTTGCCGCCAAGG ATCTGATGGCGCAGGGGATCAAGATCTGATCAAGAGACAGGATGACGGTCGTTTCGCATG CTTGAACAAGATGGATTGCACGCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTATTCGGC TATGACTGGGCACAACAGACAATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTGTCAGCG CAGGGGCGCCCGGTTCTTTTTGTCAAGACCGACCTGTCCGGTGCCCTGAATGAACTGCAG GACGAGGCAGCGCGGCTATCGTGGCTGGCCACGACGGGCGTTCCTTGCGCAGCTGTGCTC GACGTTGTCACTGAAGCGGGAAGGGACTGGCTGCTATTGGGCGAAGTGCCGGGGCAGGAT CTCCTGTCATCTCACCTTGCTCCTGCCGAGAAAGTATCCATCATGGCTGATGCAATGCGG CGGCTGCATACGCTTGATCCGGCTACCTGCCCATTCGACCACCAAGCGAAACATCGCATC GAGCGAGCACGCACTCGGATGGAAGCCGGTCTTGTCGATCAGGATGATCTGGACGAAGAG CATCAGGGGCTCGCGCCAGCCGAACTGTTCGCCAGGCTCAAGGCGCGTATGCCGGATGGT GAGGATCTCGTCGTGACTCATGGCGATGCCTGCTTGCCGAATATCATGGTGGAAAATGGC CGCTTTTCTGGATTCATCGACTGTGGCCGGCTGGGTGTGGCGGACCGCTATCAGGACATA GCGTTGGCTACCCGTGATATTGCTGAAGAGCTTGGCGGCGAATGGGCTGACCGCTTCCTC GTGCTTTACGGTATCGCCGCTCCCGATTCGCAGCGCATCGCCTTCTATCGCCTTCTTGAC GAGTTCTTCTGAGCGGGACTCTGGGGTTCGAAATGACCGACCAAGCGACGCCCAACCGGT ATCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCAGGAAA GAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCGTAAAAAGGCCGCGTTGCTGGC GTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAAAAATCGACGCTCAAGTCAGAG GTGGCGAAACCCGACAGGACTATAAAGATACCAGGCGTTTCCCCCTGGAAGCTCCCTCGT GCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCTGTCCGCCTTTCTCCCTTCGGG AAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTATCTCAGTTCGGTGTAGGTCGTTCG CTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCCCGACCGCTGCGCCTTATCCGG TAACTATCGTCTTGAGTCCAACCCGGTAAGACACGACTTATCGCCACTGGCAGCAGCCAC TGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCGGTGCTACAGAGTTCTTGAAGTGGTG GCCTAACTACGGCTACACTAGAAGGACAGTATTTGGTATCTGCGCTCTGCTGAAGCCAGT TACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAAACAAACCACCGCTGGTAGCGG TGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAAAAAAGGATTTCAAGAAGATCC TTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGAACGAAAACTCACGTTAAGGGATTTT GGTCATGAGATTATCAAAAAGGATCTTCACCTAGATCCTTTTATAGTCCGGAAATACAGG AACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAAACCATGAAAAATGGCAGCTTCAGT GGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTGCATAGGTATTCATACGGTTAA AATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTACCTGTCT GCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTACAATTAAGGGATTATGGTAAA TCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAAACCGCAGTACTCCGGCCACGATGC GTCCGGCGTAGAGGATCGAGATCTTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAG CGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCAT GCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAG AGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTC GTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGG ATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTG CCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAA CTCTTTTGTTTATTTTTCTAAATACATTCAAATATGTATCCGCTCAT
more Linker info
