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SpecieshumanProduct IDFXC00051Cloning SiteSgfI-PmeIGeneKIAA0327SymbolPCDHGA8
Alias : PCDH-GAMMA-A8Descriptionprotocadherin gamma subfamily A, 8, transcript variant 2Original Clone IDcp00038
Length: 2460 bp
Restriction map A
Restriction map B
Genomic Structure
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Length: 820 aa
Result of homology search against CCDS protein database (
FASTA output,
Multiple alignment)
Entry Exp ID% symbol CCDS75338.1 0 100.0 PCDHGA8 CCDS47291.1 0 100.0 PCDHGA8 CCDS75341.1 0 78.8 PCDHGA9 CCDS58981.1 0 78.8 PCDHGA9 CCDS75343.1 0 74.6 PCDHGA10
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
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Result of InterProScan
Search method interpro_ID From To Entry Definition FPrintScan IPR002126 73 92 PR00205 Cadherin IPR002126 242 271 PR00205 Cadherin IPR002126 314 326 PR00205 Cadherin IPR002126 431 450 PR00205 Cadherin IPR002126 450 463 PR00205 Cadherin IPR002126 510 536 PR00205 Cadherin IPR002126 544 561 PR00205 Cadherin HMMPfam IPR013164 29 112 PF08266 Cadherin IPR002126 140 233 PF00028 Cadherin IPR002126 247 337 PF00028 Cadherin IPR002126 356 442 PF00028 Cadherin IPR002126 457 552 PF00028 Cadherin IPR002126 583 664 PF00028 Cadherin HMMSmart IPR002126 19 131 SM00112 Cadherin IPR002126 155 240 SM00112 Cadherin IPR002126 264 345 SM00112 Cadherin IPR002126 369 450 SM00112 Cadherin IPR002126 474 560 SM00112 Cadherin IPR002126 591 669 SM00112 Cadherin ProfileScan IPR002126 29 133 PS50268 Cadherin IPR002126 134 242 PS50268 Cadherin IPR002126 243 347 PS50268 Cadherin IPR002126 356 452 PS50268 Cadherin IPR002126 453 562 PS50268 Cadherin IPR002126 579 682 PS50268 Cadherin
Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length SOSUI2 1 12 ELILLCALLGTLWEIGRGQIRYS 34 SECONDARY 23 2 691 LYLVVAVAAISCVFLAFVAVLLG 713 PRIMARY 23
Result of homology search against disease genes in OMIM database(FASTA output,
Multiple alignment)
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_054723 820 606295 100.0 100.0 NP_114477 932 606295 100.0 98.5 NP_114478 828 606296 78.8 97.1 NP_061744 932 606296 78.8 97.1 NP_114479 850 606297 74.6 97.2 Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.comCloned ORF Nucleotide sequence for pF1KA0327 Download>KIAA0327 2460 bp ATGGCCGCTCCACAGAGTCGCCCCAGACGCGGCGAGCTGATCCTGCTGTGCGCGCTGCTG GGAACGCTGTGGGAAATCGGGAGGGGACAGATTCGCTACTCTGTGCCAGAAGAGACGGAC AAAGGCTCCTTCGTGGGTAATATCTCCAAGGACCTGGGGCTGGACCCCCGGAAGCTGGCG AAGCACGGAGTCCGTATCGTCTCCAGAGGTAGGACGCAGCTCTTTGCTCTGAACCCGCGC AGCGGCAGCTTGATCACCGCGGGCAGGATAGATCGGGAGGAGCTCTGCGCTCAGAGCCCG CGGTGTCTGATAAATATTAACACCCTGGTTGAGGATAAAGGAAAACTCTTTGGGGTAGAA ATAGAAATAATTGATATTAACGATAATAACCCAAAATTCCAGGTCGAAGATCTAGAAGTA AAAATTAACGAAATCGCGGTTCCTGGAGCACGTTATCCACTCCCAGAAGCTGTTGACCCG GATGTGGGCGTGAACTCCCTCCAGAGCTACCAGCTCAGCCCCAATCACCACTTCTCCCTG GACGTGCAGACTGGAGACAATGGAGCCATAAACCCAGAGCTGGTGCTGGAGCGCGCCCTG GACAGGGAGGAAGAGGCTGCTCACCACCTGGTCCTCACGGCCTCGGATGGCGGCAAGCCG CCTCGCTCTAGCACAGTGCGCATCCACGTGACAGTGTTGGATACAAATGACAATGCCCCG GTTTTTCCTCACCCGATTTACCGAGTGAAAGTCCTTGAGAACATGCCCCCAGGCACGCGG CTGCTTACTGTAACAGCCAGCGACCCGGATGAGGGAATCAACGGAAAAGTGGCATACAAA TTCCGGAAAATTAATGAAAAACAAACTCCGTTATTCCAGCTTAATGAAAATACTGGGGAA ATATCAATAGCAAAAAGTCTAGATTATGAAGAATGTTCATTTTATGAAATGGAAATACAA GCCGAAGATGTGGGGGCACTTCTGGGGAGGACCAAATTGCTCATTTCGGTGGAAGATGTA AATGACAATAGACCAGAAGTGATCATTACGTCTTTGTTTAGCCCAGTGTTAGAAAATTCT CTTCCCGGGACAGTAATTGCCTTCTTGAGTGTGCATGACCAAGACTCTGGAAAGAATGGT CAAGTTGTCTGTTACACACGTGATAATTTACCTTTTAAATTAGAAAAGTCAATAGGTAAT TATTATAGATTAGTAACAAGGAAATATTTGGACCGAGAAAATGTCTCTATCTACAATATC ACAGTGATGGCCTCAGATCTAGGAACACCACCTCTGTCCACTGAAACTCAAATCGCTCTG CACGTGGCAGACATTAACGACAACCCTCCTACTTTCCCTCATGCCTCCTACTCAGCGTAT ATCCTAGAGAACAACCTGAGAGGAGCCTCCATCTTTTCCTTGACTGCACACGACCCCGAC AGCCAGGAGAATGCCCAGGTCACTTACTCTGTGACCGAGGACACGCTGCAGGGGGCGCCC CTGTCCTCGTATATCTCCATCAACTCTGACACCGGTGTCCTGTATGCGCTGCAATCTTTC GACTATGAGCAGATCCGAGACCTGCAGCTACTGGTAACAGCCAGCGACAGCGGGGACCCG CCCCTCAGCAGCAACATGTCACTGAGCCTGTTCGTGCTGGACCAGAATGACAACGCGCCC GAGATCCTGTACCCCGCCCTCCCCACAGACGGTTCCACTGGCGTGGAGCTGGCGCCCCGC TCCGCAGAGCGTGGCTACCTGGTGACCAAGGTGGTGGCGGTGGACAGAGACTCGGGCCAG AACGCCTGGCTGTCCTACCGCCTGCTCAAGGCCAGCGAGCCGGGACTCTTCTCGGTGGGT CTGCACACGGGCGAGGTGCGCACGGCGCGAGCCCTGCTGGACAGAGACGCGCTCAAGCAG AGCCTCGTGGTGGCCGTCCAGGACCATGGCCAGCCCCCTCTCTCCGCCACTGTCACGCTC ACCGTAGCCGTGGCTGACAGCATCCCCGAAGTCCTGACCGAGTTGGGCAGTCTGAAGCCT TCGGTCGACCCGAACGATTCGAGCCTTACACTCTATCTCGTGGTGGCAGTGGCTGCCATC TCCTGTGTCTTCCTCGCCTTTGTCGCTGTGCTTCTGGGGCTCAGGCTGAGGCGCTGGCAC AAGTCACGCCTGCTCCAGGATTCCGGTGGCAGATTGGTAGGCGTGCCTGCCTCACATTTT GTGGGTGTTGAGGAGGTACAGGCTTTCCTGCAGACCTATTCCCAGGAAGTCTCCCTCACC GCCGACTCGCGGAAGAGTCACCTGATCTTTCCCCAGCCCAACTACGCAGACATGCTCATC AGTCAGGAGGGCTGTGAGAAAAATGATTCTTTGTTAACATCCGTAGATTTTCATGAATAT AAGAATGAAGCTGATCATGGTCAGGTGAGTTTAGTTCTTTGCTTGCTTTTAATTTCCAGA
Cloned ORF protein sequence for pF1KA0327 Download>KIAA0327 820 aa MAAPQSRPRRGELILLCALLGTLWEIGRGQIRYSVPEETDKGSFVGNISKDLGLDPRKLA KHGVRIVSRGRTQLFALNPRSGSLITAGRIDREELCAQSPRCLININTLVEDKGKLFGVE IEIIDINDNNPKFQVEDLEVKINEIAVPGARYPLPEAVDPDVGVNSLQSYQLSPNHHFSL DVQTGDNGAINPELVLERALDREEEAAHHLVLTASDGGKPPRSSTVRIHVTVLDTNDNAP VFPHPIYRVKVLENMPPGTRLLTVTASDPDEGINGKVAYKFRKINEKQTPLFQLNENTGE ISIAKSLDYEECSFYEMEIQAEDVGALLGRTKLLISVEDVNDNRPEVIITSLFSPVLENS LPGTVIAFLSVHDQDSGKNGQVVCYTRDNLPFKLEKSIGNYYRLVTRKYLDRENVSIYNI TVMASDLGTPPLSTETQIALHVADINDNPPTFPHASYSAYILENNLRGASIFSLTAHDPD SQENAQVTYSVTEDTLQGAPLSSYISINSDTGVLYALQSFDYEQIRDLQLLVTASDSGDP PLSSNMSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAERGYLVTKVVAVDRDSGQ NAWLSYRLLKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTL TVAVADSIPEVLTELGSLKPSVDPNDSSLTLYLVVAVAAISCVFLAFVAVLLGLRLRRWH KSRLLQDSGGRLVGVPASHFVGVEEVQAFLQTYSQEVSLTADSRKSHLIFPQPNYADMLI SQEGCEKNDSLLTSVDFHEYKNEADHGQVSLVLCLLLISR
Nucleotide Sequence (with vector) for pF1KA0327 Download>pF1KA0327 5573 bp GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGGCCGCTCCA CAGAGTCGCCCCAGACGCGGCGAGCTGATCCTGCTGTGCGCGCTGCTGGGAACGCTGTGG GAAATCGGGAGGGGACAGATTCGCTACTCTGTGCCAGAAGAGACGGACAAAGGCTCCTTC GTGGGTAATATCTCCAAGGACCTGGGGCTGGACCCCCGGAAGCTGGCGAAGCACGGAGTC CGTATCGTCTCCAGAGGTAGGACGCAGCTCTTTGCTCTGAACCCGCGCAGCGGCAGCTTG ATCACCGCGGGCAGGATAGATCGGGAGGAGCTCTGCGCTCAGAGCCCGCGGTGTCTGATA AATATTAACACCCTGGTTGAGGATAAAGGAAAACTCTTTGGGGTAGAAATAGAAATAATT GATATTAACGATAATAACCCAAAATTCCAGGTCGAAGATCTAGAAGTAAAAATTAACGAA ATCGCGGTTCCTGGAGCACGTTATCCACTCCCAGAAGCTGTTGACCCGGATGTGGGCGTG AACTCCCTCCAGAGCTACCAGCTCAGCCCCAATCACCACTTCTCCCTGGACGTGCAGACT GGAGACAATGGAGCCATAAACCCAGAGCTGGTGCTGGAGCGCGCCCTGGACAGGGAGGAA GAGGCTGCTCACCACCTGGTCCTCACGGCCTCGGATGGCGGCAAGCCGCCTCGCTCTAGC ACAGTGCGCATCCACGTGACAGTGTTGGATACAAATGACAATGCCCCGGTTTTTCCTCAC CCGATTTACCGAGTGAAAGTCCTTGAGAACATGCCCCCAGGCACGCGGCTGCTTACTGTA ACAGCCAGCGACCCGGATGAGGGAATCAACGGAAAAGTGGCATACAAATTCCGGAAAATT AATGAAAAACAAACTCCGTTATTCCAGCTTAATGAAAATACTGGGGAAATATCAATAGCA AAAAGTCTAGATTATGAAGAATGTTCATTTTATGAAATGGAAATACAAGCCGAAGATGTG GGGGCACTTCTGGGGAGGACCAAATTGCTCATTTCGGTGGAAGATGTAAATGACAATAGA CCAGAAGTGATCATTACGTCTTTGTTTAGCCCAGTGTTAGAAAATTCTCTTCCCGGGACA GTAATTGCCTTCTTGAGTGTGCATGACCAAGACTCTGGAAAGAATGGTCAAGTTGTCTGT TACACACGTGATAATTTACCTTTTAAATTAGAAAAGTCAATAGGTAATTATTATAGATTA GTAACAAGGAAATATTTGGACCGAGAAAATGTCTCTATCTACAATATCACAGTGATGGCC TCAGATCTAGGAACACCACCTCTGTCCACTGAAACTCAAATCGCTCTGCACGTGGCAGAC ATTAACGACAACCCTCCTACTTTCCCTCATGCCTCCTACTCAGCGTATATCCTAGAGAAC AACCTGAGAGGAGCCTCCATCTTTTCCTTGACTGCACACGACCCCGACAGCCAGGAGAAT GCCCAGGTCACTTACTCTGTGACCGAGGACACGCTGCAGGGGGCGCCCCTGTCCTCGTAT ATCTCCATCAACTCTGACACCGGTGTCCTGTATGCGCTGCAATCTTTCGACTATGAGCAG ATCCGAGACCTGCAGCTACTGGTAACAGCCAGCGACAGCGGGGACCCGCCCCTCAGCAGC AACATGTCACTGAGCCTGTTCGTGCTGGACCAGAATGACAACGCGCCCGAGATCCTGTAC CCCGCCCTCCCCACAGACGGTTCCACTGGCGTGGAGCTGGCGCCCCGCTCCGCAGAGCGT GGCTACCTGGTGACCAAGGTGGTGGCGGTGGACAGAGACTCGGGCCAGAACGCCTGGCTG TCCTACCGCCTGCTCAAGGCCAGCGAGCCGGGACTCTTCTCGGTGGGTCTGCACACGGGC GAGGTGCGCACGGCGCGAGCCCTGCTGGACAGAGACGCGCTCAAGCAGAGCCTCGTGGTG GCCGTCCAGGACCATGGCCAGCCCCCTCTCTCCGCCACTGTCACGCTCACCGTAGCCGTG GCTGACAGCATCCCCGAAGTCCTGACCGAGTTGGGCAGTCTGAAGCCTTCGGTCGACCCG AACGATTCGAGCCTTACACTCTATCTCGTGGTGGCAGTGGCTGCCATCTCCTGTGTCTTC CTCGCCTTTGTCGCTGTGCTTCTGGGGCTCAGGCTGAGGCGCTGGCACAAGTCACGCCTG CTCCAGGATTCCGGTGGCAGATTGGTAGGCGTGCCTGCCTCACATTTTGTGGGTGTTGAG GAGGTACAGGCTTTCCTGCAGACCTATTCCCAGGAAGTCTCCCTCACCGCCGACTCGCGG AAGAGTCACCTGATCTTTCCCCAGCCCAACTACGCAGACATGCTCATCAGTCAGGAGGGC TGTGAGAAAAATGATTCTTTGTTAACATCCGTAGATTTTCATGAATATAAGAATGAAGCT GATCATGGTCAGGTGAGTTTAGTTCTTTGCTTGCTTTTAATTTCCAGAGTTTAAACGAAT TCGAGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGC TGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGC ATAACCCCTTGGGGCCTCTAAACGGGTCTTGAGGGGTTTTTTGCTGAAAGGAGGAACTAT ATCCGGTTCGCTTGCTGTCCATAAAACCGCCCAGTCTAGCTATCGCCATGTAAGCCCACT GCAAGCTACCTGCTTTCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCT GACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTACGTGTTCCGCTTCCT TTAGCAGCCCTTGCGCCCTGAGTGCTTGCGGCAGCGTGAGCTTCAAAAGAATTGCCAGCT GGGGCGCCCTCTGGTAAGGTTGGGAAGCCCTGCAAAGTAAACTGGATGGCTTTCTTGCCG CCAAGGATCTGATGGCGCAGGGGATCAAGATCTGATCAAGAGACAGGATGACGGTCGTTT CGCATGCTTGAACAAGATGGATTGCACGCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTA TTCGGCTATGACTGGGCACAACAGACAATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTG TCAGCGCAGGGGCGCCCGGTTCTTTTTGTCAAGACCGACCTGTCCGGTGCCCTGAATGAA CTGCAGGACGAGGCAGCGCGGCTATCGTGGCTGGCCACGACGGGCGTTCCTTGCGCAGCT GTGCTCGACGTTGTCACTGAAGCGGGAAGGGACTGGCTGCTATTGGGCGAAGTGCCGGGG CAGGATCTCCTGTCATCTCACCTTGCTCCTGCCGAGAAAGTATCCATCATGGCTGATGCA ATGCGGCGGCTGCATACGCTTGATCCGGCTACCTGCCCATTCGACCACCAAGCGAAACAT CGCATCGAGCGAGCACGCACTCGGATGGAAGCCGGTCTTGTCGATCAGGATGATCTGGAC GAAGAGCATCAGGGGCTCGCGCCAGCCGAACTGTTCGCCAGGCTCAAGGCGCGTATGCCG GATGGTGAGGATCTCGTCGTGACTCATGGCGATGCCTGCTTGCCGAATATCATGGTGGAA AATGGCCGCTTTTCTGGATTCATCGACTGTGGCCGGCTGGGTGTGGCGGACCGCTATCAG GACATAGCGTTGGCTACCCGTGATATTGCTGAAGAGCTTGGCGGCGAATGGGCTGACCGC TTCCTCGTGCTTTACGGTATCGCCGCTCCCGATTCGCAGCGCATCGCCTTCTATCGCCTT CTTGACGAGTTCTTCTGAGCGGGACTCTGGGGTTCGAAATGACCGACCAAGCGACGCCCA ACCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGC AGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCGTAAAAAGGCCGCGTT GCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAAAAATCGACGCTCAAG TCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGGCGTTTCCCCCTGGAAGCTC CCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCTGTCCGCCTTTCTCCC TTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTATCTCAGTTCGGTGTAGGT CGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCCCGACCGCTGCGCCTT ATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGACTTATCGCCACTGGCAGC AGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCGGTGCTACAGAGTTCTTGAA GTGGTGGCCTAACTACGGCTACACTAGAAGGACAGTATTTGGTATCTGCGCTCTGCTGAA GCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAAACAAACCACCGCTGG TAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAAAAAAGGATTTCAAGA AGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGAACGAAAACTCACGTTAAGG GATTTTGGTCATGAGATTATCAAAAAGGATCTTCACCTAGATCCTTTTATAGTCCGGAAA TACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAAACCATGAAAAATGGCAGC TTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTGCATAGGTATTCATAC GGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTAC CTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTACAATTAAGGGATTAT GGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAAACCGCAGTACTCCGGCCA CGATGCGTCCGGCGTAGAGGATCGAGATCTTTTCAGCCTGATACAGATTAAATCAGAACG CAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGA CCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCA TGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGG CCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGG GAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCAT AAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTC TACAAACTCTTTTGTTTATTTTTCTAAATACATTCAAATATGTATCCGCTCAT
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