# 0 Query: pF1KA0560, 1485 aa
# 1 CCDS42013.1 AQR gene_id:9716|Hs108|chr15 (1485 aa)
# 2 CCDS12386.1 UPF1 gene_id:5976|Hs108|chr19 (1118 aa)
# 3 CCDS74315.1 UPF1 gene_id:5976|Hs108|chr19 (1129 aa)
//
exp sw-scr id% from to
1 0 9917 100.0 1 1485
2 2.5e-12 354 24.2 590 1048
3 2.5e-12 354 24.2 601 1059
//
0 ( 1) MAAPAQPKKIVAPTVSQINAEFVTQLACKYWAPHIKKKSPFDIKVIEDIYEKEIVKSRFA
1 ( 1) MAAPAQPKKIVAPTVSQINAEFVTQLACKYWAPHIKKKSPFDIKVIEDIYEKEIVKSRFA
2 ( -) ............................................................
3 ( -) ............................................................
//
0 ( 61) IRKIMLLEFSQYLENYLWMNYSPEVSSKAYLMSICCMVNEKFRENVPAWEIFKKKPDHFP
1 ( 61) IRKIMLLEFSQYLENYLWMNYSPEVSSKAYLMSICCMVNEKFRENVPAWEIFKKKPDHFP
2 ( -) ............................................................
3 ( -) ............................................................
//
0 ( 121) FFFKHILKAALAETDGEFSLHEQTVLLLFLDHCFNSLEVDLIRSQVQQLISLPMWMGLQL
1 ( 121) FFFKHILKAALAETDGEFSLHEQTVLLLFLDHCFNSLEVDLIRSQVQQLISLPMWMGLQL
2 ( -) ............................................................
3 ( -) ............................................................
//
0 ( 181) ARLELELKKTPKLRKFWNLIKKNDEKMDPEAREQAYQERRFLSQLIQKFISVLKSVPLSE
1 ( 181) ARLELELKKTPKLRKFWNLIKKNDEKMDPEAREQAYQERRFLSQLIQKFISVLKSVPLSE
2 ( -) ............................................................
3 ( -) ............................................................
//
0 ( 241) PVTMDKVHYCERFIELMIDLEALLPTRRWFNTILDDSHLLVHCYLSNLVRREEDGHLFSQ
1 ( 241) PVTMDKVHYCERFIELMIDLEALLPTRRWFNTILDDSHLLVHCYLSNLVRREEDGHLFSQ
2 ( -) ............................................................
3 ( -) ............................................................
//
0 ( 301) LLDMLKFYTGFEINDQTGNALTENEMTTIHYDRITSLQRAAFAHFPELYDFALSNVAEVD
1 ( 301) LLDMLKFYTGFEINDQTGNALTENEMTTIHYDRITSLQRAAFAHFPELYDFALSNVAEVD
2 ( -) ............................................................
3 ( -) ............................................................
//
0 ( 361) TRESLVKFFGPLSSNTLHQVASYLCLLPTLPKNEDTTFDKEFLLELLVSRHERRISQIQQ
1 ( 361) TRESLVKFFGPLSSNTLHQVASYLCLLPTLPKNEDTTFDKEFLLELLVSRHERRISQIQQ
2 ( -) ............................................................
3 ( -) ............................................................
//
0 ( 421) LNQMPLYPTEKIIWDENIVPTEYYSGEGCLALPKLNLQFLTLHDYLLRNFNLFRLESTYE
1 ( 421) LNQMPLYPTEKIIWDENIVPTEYYSGEGCLALPKLNLQFLTLHDYLLRNFNLFRLESTYE
2 ( -) ............................................................
3 ( -) ............................................................
//
0 ( 481) IRQDIEDSVSRMKPWQSEYGGVVFGGWARMAQPIVAFTVVEVAKPNIGENWPTRVRADVT
1 ( 481) IRQDIEDSVSRMKPWQSEYGGVVFGGWARMAQPIVAFTVVEVAKPNIGENWPTRVRADVT
2 ( -) ............................................................
3 ( -) ............................................................
//
0 ( 541) INLNVRDHIKDEWEGLRKHDVCFLITVRPTKPYGTKFDRRRPFIEQVGLVYVRGCEIQGM
1 ( 541) INLNVRDHIKDEWEGLRKHDVCFLITVRPTKPYGTKFDRRRPFIEQVGLVYVRGCEIQGM
2 ( -) ............................................................
3 ( -) ............................................................
//
0 ( 601) LDDKGRVIEDGPEPRPNLRGESRTFRVFLDPNQYQQDMTNTIQNGAEDVYETFNIIMRRK
1 ( 601) LDDKGRVIEDGPEPRPNLRGESRTFRVFLDPNQYQQDMTNTIQNGAEDVYETFNIIMRRK
2 ( -) ............................................................
3 ( -) ............................................................
//
0 ( 661) PKENNFKAVLETIRNLMNTDCVVPDWLHDIILGYGDPSSAHYSKMPNQIATLDFNDTFLS
1 ( 661) PKENNFKAVLETIRNLMNTDCVVPDWLHDIILGYGDPSSAHYSKMPNQIATLDFNDTFLS
2 ( -) ............................................................
3 ( -) ............................................................
//
0 ( 721) IEHLKASFPGHNVKVTVEDPALQIPPFRITFPVRSGKGKKRKDADVEDEDTEEAKTLIVE
1 ( 721) IEHLKASFPGHNVKVTVEDPALQIPPFRITFPVRSGKGKKRKDADVEDEDTEEAKTLIVE
2 ( -) ............................................................
3 ( -) ............................................................
//
0 ( 781) PHVIPNRGPYPYNQPKRNTIQFTHTQIEAIRAGMQPGLTMVVGPPGTGKTDVAVQIISNI
1 ( 781) PHVIPNRGPYPYNQPKRNTIQFTHTQIEAIRAGMQPGLTMVVGPPGTGKTDVAVQIISNI
2 ( -) ............................................................
3 ( -) ............................................................
//
0 ( 841) YHNFPEQRTLIVTHSNQALNQLFEKIMALDIDERHLLRLGHGEEELETEKDFSRYGRVNY
1 ( 841) YHNFPEQRTLIVTHSNQALNQLFEKIMALDIDERHLLRLGHGEEELETEKDFSRYGRVNY
2 ( -) ............................................................
3 ( -) ............................................................
//
0 ( 901) VLARRIELLEEVKRLQKSLGVPGDASYTCETAGYFFLYQVMSRWEEYISKVKNKGSTLPD
1 ( 901) VLARRIELLEEVKRLQKSLGVPGDASYTCETAGYFFLYQVMSRWEEYISKVKNKGSTLPD
2 ( -) ............................................................
3 ( -) ............................................................
//
0 ( 961) VTEVSTFFPFHEYFANAPQPIFKGRSYEEDMEIAEGCFRHIKKIFTQLEEFRASELLRSG
1 ( 961) VTEVSTFFPFHEYFANAPQPIFKGRSYEEDMEIAEGCFRHIKKIFTQLEEFRASELLRSG
2 ( 590) ....................................................ADEKRYRA
3 ( 601) ....................................................ADEKRYRA
//
0 ( 1021) LDRS-KYLLVKEAKIIAMTCTHAALKRHDLVKLGFKYDNILMEEAAQILEIETFIPLLLQ
1 ( 1021) LDRS-KYLLVKEAKIIAMTCTHAALKRHDLVKLGFKYDNILMEEAAQILEIETFIPLLLQ
2 ( 598) LKRTAERELLMNADVICCTCVGAGDPR--LAKMQFR--SILIDESTQATEPECMVPVVLG
3 ( 609) LKRTAERELLMNADVICCTCVGAGDPR--LAKMQFR--SILIDESTQATEPECMVPVVLG
//
0 ( 1080) NPQDGFSRLKRWIMIGDHHQLPPVIKNMAFQKYSNMEQSLFTRFVRVGVPTVDLDAQGRA
1 ( 1080) NPQDGFSRLKRWIMIGDHHQLPPVIKNMAFQKYSNMEQSLFTRFVRVGVPTVDLDAQGRA
2 ( 654) A--------KQLILVGDHCQLGPVVMCKKAAK-AGLSQSLFERLVVLGIRPIRLQVQYRM
3 ( 665) A--------KQLILVGDHCQLGPVVMCKKAAK-AGLSQSLFERLVVLGIRPIRLQVQYRM
//
0 ( 1140) RASLCNL-YNWRYKNLGNLPHVQLLPEFSTANAGLLYDFQLINVED--F----QGVGESE
1 ( 1140) RASLCNL-YNWRYKNLGNLPHVQLLPEFSTANAGLLYDFQLINVED--F----QGVGESE
2 ( 705) HPALSAFPSNIFYE--GSLQN--GVTAADRVKKG--FDFQWPQPDKPMFFYVTQGQEEIA
3 ( 716) HPALSAFPSNIFYE--GSLQN--GVTAADRVKKG--FDFQWPQPDKPMFFYVTQGQEEIA
//
0 ( 1193) PNPYFYQNLGEAEYVVALFMYMCLLGYPADKISILTTYNGQKHLIRDIINRRCGNNPLIG
1 ( 1193) PNPYFYQNLGEAEYVVALFMYMCLLGYPADKISILTTYNGQKHLIRDIINRRCGNNPLIG
2 ( 759) SSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLY
3 ( 770) SSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLY
//
0 ( 1253) RPNKVTTVDRFQGQQNDYILLSLVRT---RAVGHLRDVRRLVVAMSRARLGLYIFARVSL
1 ( 1253) RPNKVTTVDRFQGQQNDYILLSLVRT---RAVGHLRDVRRLVVAMSRARLGLYIFARVSL
2 ( 819) QEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKA
3 ( 830) QEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKA
//
0 ( 1310) FQNCFELTPAFSQLTARPLHLHIIPTEPFPTTRKNGERPSHEVQIIKNMPQMANFVYNMY
1 ( 1310) FQNCFELTPAFSQLTARPLHLHIIPTEPFPTTRKNGERPSHEVQIIKNMPQMANFVYNMY
2 ( 879) LSK----QPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFM----
3 ( 890) LSK----QPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFM----
//
0 ( 1370) MHLIQTTHHYHQTLLQLPPAMVEEGEEVQNQETELETEEEAMTVQADI-------IPSPT
1 ( 1370) MHLIQTTHHYHQTLLQLPPAMVEEGEEVQNQETELETEEEAMTVQADI-------IPSPT
2 ( 931) -----TTAMYDAREAIIPGSVYDRSSQGRPSSMYFQTHDQIGMISAGPSHVAAMNIPIPF
3 ( 942) -----TTAMYDAREAIIPGSVYDRSSQGRPSSMYFQTHDQIGMISAGPSHVAAMNIPIPF
//
0 ( 1423) DTSCRQETPAFQTDTTPSETGATSTPEAIPALSETTPTVVGAVSAPAEANTP-----QDA
1 ( 1423) DTSCRQETPAFQTDTTPSETGATSTPEAIPALSETTPTVVGAVSAPAEANTP-----QDA
2 ( 986) NLVMPPMPPPGYFGQANGPAAGRGTPKGKTGRGGRQKNRFG-LPGPSQTNLPNSQASQDV
3 ( 997) NLVMPPMPPPGYFGQANGPAAGRGTPKGKTGRGGRQKNRFG-LPGPSQTNLPNSQASQDV
//
0 ( 1478) TSAPEETK
1 ( 1478) TSAPEETK
2 ( 1045) ASQP....
3 ( 1056) ASQP....
//
