#  0    Query: pF1KB8953, 328 aa
#  1    CCDS2271.1 HOXD1 gene_id:3231|Hs108|chr2    (328 aa)
#  2    CCDS32675.1 HOXB1 gene_id:3211|Hs108|chr17    (301 aa)
#  3    CCDS5401.1 HOXA1 gene_id:3198|Hs108|chr7    (335 aa)

//
        exp       sw-scr    id%      from      to
   1    5.9e-68     2225   99.7         1     328
   2    1.8e-12      555   39.9         6     297
   3    3.4e-12      536   37.0         6     328

//
                                                                             
   0  (    1)    MSSYLEYVSCSSSGGVGGDVLSLAPKFCRSDARPVALQPAFPLGN---GDGAFVSCLPLA
   1  (    1)    MSSYLEYVSCSSSGGVGGDVLSLAPKFCRSDARPVALQPAFPLGN---GDGAFVSCLPLA
   2  (    6)    MNSFLEYPLCNR-GPSAYSAHSAPTSFPPSSAQAVD-SYASEGRY---GGGLSSPAFQQN
   3  (    6)    MNSFLEYPILSS-----GDSGTCSARAYPSDHRITTFQSCAVSANSCGGDDRFLVGRGVQ

//
                                                                             
   0  (   58)    AARPSPSPPAAPARPSVPPPAAPQYAQCTLEGAYEPGAAPAAAAGGADYGFLGSGPAYDF
   1  (   58)    AARPSPSPPAAPARPSVPPPAAPQYAQCTLEGAYEPGAAPAAAAGGADYGFLGSGPAYDF
   2  (   61)    SGYPAQQPPSTLGVPF--PSSAPS------------GYAPAACS--PSYG-----PSQYY
   3  (   61)    IGSPHHHHHHHHRHPQ---PATYQTS-----GNL--GVSYSHSSCGPSYGSQNFSAPYS-

//
                                                                             
   0  (  118)    PGVLGRAADDGGSHVHYATSAVFSGG-GSFLLSGQVDYAAF--GE-PGPFPACLKASADG
   1  (  118)    PGVLGRAADDGGSHVHYATSAVFSGG-GSFLLSGQVDYAAF--GE-PGPFPACLKASADG
   2  (  100)    P--LGQSEGDGG-YFHPSSYGAQLGG----LSDG---YGAG--GAGPGPYP-------PQ
   3  (  110)    PYALNQEADVSGGYPQCAP-AVYSGNLSSPMVQHHHHHQGYAGGA-VGS-PQYIHHSYGQ

//
                                                                             
   0  (  174)    HP--GAFQTA------SPAPGTYPKSV-S-----PASGLPAAFS--TFEWMKVKRNASKK
   1  (  174)    HP--GAFQTA------SPAPGTYPKSV-S-----PASGLPAAFS--TFEWMKVKRNASKK
   2  (  141)    HPPYGNEQTA------SFAPA-YADLL-SEDKETPCPSEPNTPTARTFDWMKVKRNPPKT
   3  (  167)    EH--QSLALATYNNSLSPLHASHQEACRS-----PASETSSPAQ--TFDWMKVKRNPPKT

//
                                                                             
   0  (  218)    GKLAEYGAASPSSAIRTNFSTKQLTELEKEFHFNKYLTRARRIEIANCLHLNDTQVKIWF
   1  (  218)    GKLAEYGAASPSSAIRTNFSTKQLTELEKEFHFNKYLTRARRIEIANCLHLNDTQVKIWF
   2  (  193)    AKVSEPGLGSPSG-LRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWF
   3  (  218)    GKVGEYGYLGQPNAVRTNFTTKQLTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWF

//
                                    *                                
   0  (  278)    QNRRMKQKKRERE-GLLATTIPVAPLQLPLSGTTPTKFIKNPGSPSQSQEPS
   1  (  278)    QNRRMKQKKRERE-GLLATAIPVAPLQLPLSGTTPTKFIKNPGSPSQSQEPS
   2  (  252)    QNRRMKQKKREREEGRVPPAPPGCPKEAAGDASDQSTCTSPEASPS......
   3  (  278)    QNRRMKQKKREKE-GLLPISPATPPGNDEKAEESSEKSSSSPCVPSPGSSTS

//