#  0    Query: pF1KB8914, 255 aa
#  1    CCDS2269.1 HOXD4 gene_id:3233|Hs108|chr2    (255 aa)
#  2    CCDS8873.1 HOXC4 gene_id:3221|Hs108|chr12    (264 aa)
#  3    CCDS11529.1 HOXB4 gene_id:3214|Hs108|chr17    (251 aa)
#  4    CCDS5405.1 HOXA4 gene_id:3201|Hs108|chr7    (320 aa)

//
        exp       sw-scr    id%      from      to
   1    4.3e-43     1819   99.6         1     255
   2    5.5e-19      903   54.4         1     264
   3    1.2e-17      856   57.7         1     237
   4    9.4e-15      744   53.2        71     306

//
                                                                             
   0  (    1)    MVMSSYMVNSKYVDPKFPPCEEYLQGGYL-GEQGADYYG----GGAQG--ADFQPP-GLY
   1  (    1)    MVMSSYMVNSKYVDPKFPPCEEYLQGGYL-GEQGADYYG----GGAQG--ADFQPP-GLY
   2  (    1)    MIMSSYLMDSNYIDPKFPPCEEYSQNSYI-PEHSPEYYGRTRESGFQHHHQELYPP-P-P
   3  (    1)    MAMSSFLINSNYVDPKFPPCEEYSQSDYLPSDHSPGYYA----GGQRRE-SSFQPEAGFG
   4  (   71)    ...ASYYAPRTAREPAYPAAALYPAHGAA-DTAYPYGYR----GGAS--------P-GRP

//
                                                                             
   0  (   53)    PRPDFGEQPFGGS-G-PGPGSALPARGHGQEPGGPGG---HYAAPGEP--C-PAPPAPPP
   1  (   53)    PRPDFGEQPFGGS-G-PGPGSALPARGHGQEPGGPGG---HYAAPGEP--C-PAPPAPPP
   2  (   58)    PRPSYPERQYSCT-SLQGPGNS---RGHG--PAQAGH---HHPEKSQSL-CEPAPLSGAS
   3  (   56)    RRAACTVQRYAACRD-PGPPPPPPP----PPPPPP--------PPGLS----PRAPAPPP
   4  (  114)    PQP---EQP-PAQ-A-KGPAHGLHA-SHVLQPQLPPPLQPRAVPPAAPRRC-EAAPATPG

//
                                                   *                         
   0  (  105)    A----PLPG-AR--AYSQSDPKQP---------PPGTALKQPAVVYPWMKKVHVNSVNPN
   1  (  105)    A----PLPG-AR--AYSQSDPKQP---------PSGTALKQPAVVYPWMKKVHVNSVNPN
   2  (  108)    AS---PSPA-PP--ACSQPAPDHP---------S-SAASKQP-IVYPWMKKIHVSTVNPN
   3  (   99)    AGALLPEPG-QRCEAVSSSPPPPPCAQNPLHPSPSHSACKEP-VVYPWMRKVHVSTVNPN
   4  (  166)    V----PAGGSAP--ACPLLLADKS---------PLGLKGKEP-VVYPWMKKIHVSAVNPS

//
                                                                             
   0  (  149)    YTGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMK
   1  (  149)    YTGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMK
   2  (  151)    YNGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMK
   3  (  157)    YAGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMK
   4  (  210)    YNGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMK

//
                                                                         
   0  (  209)    WKKDHKLPNTKGRSS-------SSSSSSSCSSSVAPSQ--HLQPMAKDHHTDLTTL
   1  (  209)    WKKDHKLPNTKGRSS-------SSSSSSSCSSSVAPSQ--HLQPMAKDHHTDLTTL
   2  (  211)    WKKDHRLPNTKVRSAPPAGAAPSTLSAATPGTSEDHSQ--SATPPEQQRAEDITRL
   3  (  217)    WKKDHKLPNTKIRSG-------GAAGSA--..........................
   4  (  270)    WKKDHKLPNTKMRSS-------NSASASAGPPGKAQTQSPHLHP............

//