# 0 Query: pF1KA1779, 1210 aa
# 1 CCDS72695.1 PER3 gene_id:8863|Hs108|chr1 (1210 aa)
# 2 CCDS89.1 PER3 gene_id:8863|Hs108|chr1 (1201 aa)
# 3 CCDS76097.1 PER3 gene_id:8863|Hs108|chr1 (1191 aa)
# 4 CCDS11131.1 PER1 gene_id:5187|Hs108|chr17 (1290 aa)
# 5 CCDS2528.1 PER2 gene_id:8864|Hs108|chr2 (1255 aa)
//
exp sw-scr id% from to
1 1.8e-214 8130 99.8 1 1210
2 1.4e-211 8023 99.1 1 1201
3 3.5e-183 7942 98.3 1 1191
4 2.2e-42 2252 37.2 126 1213
5 2.1e-36 2180 38.0 68 1218
//
0 ( 1) MPRGEAPGPGRRGAKDEALGEESGERWSPE-FHLQRKLADSSH--------SEQQDRNRV
1 ( 1) MPRGEAPGPGRRGAKDEALGEESGERWSPE-FHLQRKLADSSH--------SEQQDRNRV
2 ( 1) MPRGEAPGPGRRGAKDEALGEESGERWSPE-FHLQRKLADSSH--------SEQQDRNRV
3 ( 1) MPRGEAPGPGRRGAKDEALGEESGERWSPE-FHLQRKLADSSH--------SEQQDRNRV
4 ( 126) ...................................................SEQSARART
5 ( 68) ..................LVEPPDARQSPDTFSLM--MAKSEHNPSTSGCSSDQSSKVDT
//
0 ( 52) SEELIMVVQEMKKYFPSERR--NK--PSTLDALNYALRCVHSVQANSEFFQIL-S-QNGA
1 ( 52) SEELIMVVQEMKKYFPSERR--NK--PSTLDALNYALRCVHSVQANSEFFQIL-S-QNGA
2 ( 52) SEELIMVVQEMKKYFPSERR--NK--PSTLDALNYALRCVHSVQANSEFFQIL-S-QNGA
3 ( 52) SEELIMVVQEMKKYFPSERR--NK--PSTLDALNYALRCVHSVQANSEFFQIL-S-QNGA
4 ( 135) QKELMTALRELKLRLPPERR--GKGRSGTLATLQYALACVKQVQANQEYYQQW-SLEEGE
5 ( 108) HKELIKTLKELKVHLPADKKAKGK--ASTLATLKYALRSVKQVKANEEYYQLLMS-SEGH
//
0 ( 106) P-QADVSMYSLEELATIASEHTSKNTDTFVAVFSFLSGRLVHISEQAALILNRKKDVLAS
1 ( 106) P-QADVSMYSLEELATIASEHTSKNTDTFVAVFSFLSGRLVHISEQAALILNRKKDVLAS
2 ( 106) P-QADVSMYSLEELATIASEHTSKNTDTFVAVFSFLSGRLVHISEQAALILNRKKDVLAS
3 ( 106) P-QADVSMYSLEELATIASEHTSKNTDTFVAVFSFLSGRLVHISEQAALILNRKKDVLAS
4 ( 192) PCSMDMSTYTLEELEHITSEYTLQNQDTFSVAVSFLTGRIVYISEQAAVLLRCKRDVFRG
5 ( 165) PCGADVPSYTVEEMESVTSEHIVKNADMFAVAVSLVSGKILYISDQVASIFHCKRDAFSD
//
0 ( 165) SHFVDLLAPQDMRVFYAHTARAQLPFWNNWTQRAAARYECAPVKPFFCRIRGGEDRKQEK
1 ( 165) SHFVDLLAPQDMRVFYAHTARAQLPFWNNWTQRAAARYECAPVKPFFCRIRGGEDRKQEK
2 ( 165) SHFVDLLAPQDMRVFYAHTARAQLPFWNNWTQRAA-RYECAPVKPFFCRIRGGEDRKQEK
3 ( 165) SHFVDLLAPQDMRVFYAHTARAQLPFWNNWTQRAAARYECAPVKPFFCRIRGGEDRKQEK
4 ( 252) TRFSELLAPQDVGVFYGSTAPSRLPTWGTGASAGSGLRDFTQEKSVFCRIRGGPDRDPGP
5 ( 225) AKFVEFLAPHDVGVFHSFTSPYKLPLWSMCSGADSFTQECMEEKSFFCRVSVRKSHENEI
//
0 ( 225) CHSPFRIIPYLIHVH-HPAQPELESEPCCLTVVEKIHSGYEAPRIPVNKRIFTTTHTPGC
1 ( 225) CHSPFRIIPYLIHVH-HPAQPELESEPCCLTVVEKIHSGYEAPRIPVNKRIFTTTHTPGC
2 ( 224) CHSPFRIIPYLIHVH-HPAQPELESEPCCLTVVEKIHSGYEAPRIPVNKRIFTTTHTPGC
3 ( 225) CHSPFRIIPYLIHVH-HPAQPELESEPCCLTVVEKIHSGYEAPRIPVNKRIFTTTHTPGC
4 ( 312) RYQPFRLTPYVTKIRVSDGAP---AQPCCLLIAERIHSGYEAPRIPPDKRIFTTRHTPSC
5 ( 285) RYHPFRMTPYLVKVR-D--QQGAESQLCCLLLAERVHSGYEAPRIPPEKRIFTTTHTPNC
//
0 ( 284) VFLEVDEKAVPLLGYLPQDLIGTSILSYLHPEDRSLMVAIHQKVLKYAGHPPFEHSPIRF
1 ( 284) VFLEVDEKAVPLLGYLPQDLIGTSILSYLHPEDRSLMVAIHQKVLKYAGHPPFEHSPIRF
2 ( 283) VFLEVDEKAVPLLGYLPQDLIGTSILSYLHPEDRSLMVAIHQKVLKYAGHPPFEHSPIRF
3 ( 284) VFLEVDEKAVPLLGYLPQDLIGTSILSYLHPEDRSLMVAIHQKVLKYAGHPPFEHSPIRF
4 ( 369) LFQDVDERAAPLLGYLPQDLLGAPVLLFLHPEDRPLMLAIHKKILQLAGQP-FDHSPIRF
5 ( 342) LFQDVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQSGGQP-FDYSPIRF
//
0 ( 344) CTQNGDYIILDSSWSSFVNPWSRKISFIIGRHKVRTSPLNEDVFA----TKIKKMNDN-D
1 ( 344) CTQNGDYIILDSSWSSFVNPWSRKISFIIGRHKVRTSPLNEDVFA----TKIKKMNDN-D
2 ( 343) CTQNGDYIILDSSWSSFVNPWSRKISFIIGRHKVRTSPLNEDVFA----TKIKKMNDN-D
3 ( 344) CTQNGDYIILDSSWSSFVNPWSRKISFIIGRHKVRTSPLNEDVFA----TKIKKMNDN-D
4 ( 428) CARNGEYVTMDTSWAGFVHPWSRKVAFVLGRHKVRTAPLNEDVFT----PPAPSPAPSLD
5 ( 401) RARNGEYITLDTSWSSFINPWSRKISFIIGRHKVRVGPLNEDVFAAHPCTEEKALHPS--
//
0 ( 399) KDITELQEQIYKLLLQPVHVSVSSGYGSLGSSGSQEQLVSIASSSEASGHRVE-ETKAEQ
1 ( 399) KDITELQEQIYKLLLQPVHVSVSSGYGSLGSSGSQEQLVSIASSSEASGHRVE-ETKAEQ
2 ( 398) KDITELQEQIYKLLLQPVHVSVSSGYGSLGSSGSQEQLVSIASSSEASGHRVE-ETKAEQ
3 ( 399) KDITELQEQIYKLLLQPVHVSVSSGYGSLGSSGSQEQLVSIASSSEASGHRVE-ETKAEQ
4 ( 484) TDIQELSEQIHRLLLQPVHSPSPTGLCGVGAVTSPGPLHSPGSSSDSNGGDAEGPGPPAP
5 ( 459) --IQELTEQIHRLLLQPVPHSGSSGYGSLGSNGSHEHLMSQTSSSDSNGH--E-DSRRRR
//
0 ( 458) MTLQQVYASVNKIKNLGQQLYIESMTKSSFKPVTGTRTEPNGGGESANGGGECKTFTSFH
1 ( 458) MTLQQVYASVNKIKNLGQQLYIESMTKSSFKPVTGTRTEPNGGGESANGGGECKTFTSFH
2 ( 457) MTLQQVYASVNKIKNLGQQLYIESMTKSSFKPVTGTRTEPNGGGE-------CKTFTSFH
3 ( 458) MTLQQVYASVNKIKNLGQQLYIESMTKSSFKPVTGTRTEPNGGGESANGGGECKTFTSFH
4 ( 544) VTFQQICKDVHLVKHQGQQLFIESRARPQSRPRL-----PATGTFKAKAL-PCQ---SPD
5 ( 514) A---EICKNGNKTKNRSHYSH-ESGEQKK-KSVTEMQTNPPA---------EKKAVPAME
//
0 ( 518) QTLKNNSVYTE------PCEDLRNDEHSPSYQQINCIDSVIRYLKSYNIPA-L-KRKCIS
1 ( 518) QTLKNNSVYTE------PCEDLRNDEHSPSYQQINCIDSVIRYLKSYNIPA-L-KRKCIS
2 ( 510) QTLKNNSVYTE------PCEDLRNDEHSPSYQQINCIDSVIRYLKSYNIPA-L-KRKCIS
3 ( 518) QTLKNNSVYTE------PCEDLRNDEHSPSYQQINCIDSVIRYLKSYNIPA-L-KRKCIS
4 ( 595) PELEAGSAPVQAPLALVPEEAERKEASSCSYQQINCLDSILRYLESCNLPS-TTKRKCAS
5 ( 560) ---KDSLGVSF------PEELACKNQPTCSYQQISCLDSVIRYLESCNEAATL-KRKCEF
//
0 ( 570) CTN-TTSSSSEEDKQ-------NHKADDVQALQAGLQIPAIPKSEMPTNGRSIDTGGGAP
1 ( 570) CTN-TTSSSSEEDKQ-------NHKADDVQALQAGLQIPAIPKSEMPTNGRSIDTGGGAP
2 ( 562) CTN-TTSSSSEEDKQ-------NHKADDVQALQAGLQIPAIPKSEMPTNGRSIDTGGGAP
3 ( 570) CTN-TTSSSSEEDKQ-------NHKADDVQALQAGLQIPAIPKSEMPTNGRSIDTGGGAP
4 ( 654) SSSYTTSSASDDDRQRTGPVSVGTKKDPPSAALSGEG--ATPRKE-PVVG-----GTLSP
5 ( 610) PAN-VPALRSS-DKR---------KATVSPGPHAG---EAEPPSRV--NSR---TGVGT-
//
0 ( 622) QILSTAM----LSLGSGISQCGYSSTIVHV----PPPETARDATLFCEPWTLNMQPAP--
1 ( 622) QILSTAM----LSLGSGISQCGYSSTIVHV----PPPETARDATLFCEPWTLNMQPAP--
2 ( 614) QILSTAM----LSLGSGISQCGYSSTIVHV----PPPETARDATLFCEPWTLNMQPAP--
3 ( 622) QILSTAM----LSLGSGISQCGYSSTIVHV----PPPETARDATLFCEPWTLNMQPAP--
4 ( 706) LALANKA----ESVVSVTSQCSFSSTIVHVGDK-KPPES--DIIMMEDLPGLAPGPAP--
5 ( 650) HLTSLALPGKAESVASLTSQCSYSSTIVHVGDKKPQPELEMVEDAASGPESLDCLAGPAL
//
0 ( 672) ---LTS-----------EE--FKHVGLTAAVLSAHTQKEEQNYVDKFRE----KILSSPY
1 ( 672) ---LTS-----------EE--FKHVGLTAAVLSAHTQKEEQNYVDKFRE----KILSSPY
2 ( 664) ---LTS-----------EE--FKHVGLTAAVLSAHTQKEEQNYVDKFRE----KILSSPY
3 ( 672) ---LTS-----------EE--FKHVGLTAAVLSAHTQKEEQNYVDKFRE----KILSSPY
4 ( 757) ---SPAPSPTVAPDPAPDA--YRPVGLTKAVLSLHTQKEEQAFLSRFRD-----------
5 ( 710) ACGLSQ-----------EKEPFKKLGLTKEVLAAHTQKEEQSFLQKFKEIRKLSIFQSHC
//
0 ( 712) SSYLQQESRSKAKYSYFQGDSTSKQTRSAGCRKGKHKRKKLPE-PPDSSSSNTGSGPRRG
1 ( 712) SSYLQQESRSKAKYSYFQGDSTSKQTRSAGCRKGKHKRKKLPE-PPDSSSSNTGSGPRRG
2 ( 704) SSYLQQESRSKAKYSYFQGDSTSKQTRSAGCRKGKHKRKKLPE-PPDSSSSNTGSGPRRG
3 ( 712) SSYLQQESRSKAKYSYFQGDSTSKQTRSAGCRKGKHKRKKLPE-PPDSSSSNTGSGPRRG
4 ( 801) -------------LGRLRGLDSSSTAPSALGERGCHHG---PA-PPSRRHHCRSKAKRSR
5 ( 759) HYYLQERSKGQPSERTAPGLRNTSGIDSPWKKTGKNRKLKSKRVKPRDSSESTGSGGPVS
//
0 ( 771) AHQ-----NAQPCCPSAASSPHTSSPTFP-PAAMVPSQAPYLVPAFPLPAATS-----PG
1 ( 771) AHQ-----NAQPCCPSAASSPHTSSPTFP-PAAMVPSQAPYLVPAFPLPAATS-----PG
2 ( 763) AHQ-----NAQPCCPSAASSPHTSSPTFP-PAAMVPSQAPYLVPAFPLPAATS-----PG
3 ( 771) AHQ-----NAQPCCPSAASSPHTSSPTFP-PAAMVPSQAPYLVPAFPLPAATS-----PG
4 ( 844) HHQ-----NPRAEAPCYVSHPSPVPPSTPWPTPPATTPFPAVVQPYPLPVFS--------
5 ( 819) ARPPLVGLNATAWSPSDTS--QSSCPAVP-FPAPVP--AAYSLPVFPAPGTVAAPPAPPH
//
*
0 ( 820) REYAAPGTAPEGLHGPPLSEGLQPYPAFPFPYLDTFMTVFLPDPPVCPLLSPSFLPCPFL
1 ( 820) REYAAPGTAPEGLHGLPLSEGLQPYPAFPFPYLDTFMTVFLPDPPVCPLLSPSFLPCPFL
2 ( 812) REYAAPGTAPEGLHGLPLSEGLQPYPAFPFPYLDTFMTVFLPDPPVCPLLSPSFLPCPFL
3 ( 820) REYAAPGTAPEGLHGLPLSEGLQPYPAFPFPYLDTFMTVFLPDPPVCPLLSPSFLPCPFL
4 ( 891) -----PRGGPQPL--PPAPTSVPP-AAFPAPLVTPMVALVLPNY-LFP--TPSSYP---Y
5 ( 874) ASFTVPAVPVDLQH----QFAVQP-PPFPAP-LAPVMAFMLPSYSF-PSGTPN-LPQAFF
//
0 ( 880) GATASSAISPSMSSAMSPTLDPP-PSVTSQRREEEKWEA------QSEGH---PFITSRS
1 ( 880) GATASSAISPSMSSAMSPTLDPP-PSVTSQRREEEKWEA------QSEGH---PFITSRS
2 ( 872) GATASSAISPSMSSAMSPTLDPP-PSVTSQRREEEKWEA------QSEGH---PFITSRS
3 ( 880) GATASSAISPSMSSAMSPTLDPP-PSVTSQRREEEKWEA------QSEGH---PFITSRS
4 ( 937) GALQTPAEGPPTPASHSPSPSLP-ALAPSPPHRPDS-----------------PLFNSRC
5 ( 926) PSQPQFPSHPTLTSEMASASQPEFPSRTSIPRQPCACPATRATPPSAMGRASPPLFQSRS
//
*
0 ( 930) SSPLQLNLLQ-EEMPRPSESPDRMRRNTCPQTEYQCVTGNNGSESSPATTGALSTGSPPR
1 ( 930) SSPLQLNLLQ-EEMPRPSESPDQMRRNTCPQTEYQCVTGNNGSESSPATTGALSTGSPPR
2 ( 922) SSPLQLNLLQ-EEMPRPSESPDQMRRNTCPQTEY-CVTGNNGSESSPATTGALSTGSPPR
3 ( 930) SSPLQLNLLQ-EEMPRPSESPDQMRRNTCPQTEY-CVTGNNGSESSPATTGALSTGSPPR
4 ( 979) SSPLQLNLLQLEELPR---------------AEGAAVAGGPGSSAGPP---------PPS
5 ( 986) SSPLQLNLLQLEEAPEGGTG----------------AMGTTGATETAAVGADCKPGTSRD
//
0 ( 989) ENPSHPTASALSTGSPPMKNPSHPTASALSTGSPPMKNPSHPTASTLSMGLPPSRTPSHP
1 ( 989) ENPSHPTASALSTGSPPMKNPSHPTASALSTGSPPMKNPSHPTASTLSMGLPPSRTPSHP
2 ( 980) ENPSHPTASALSTGSPPMKNPSHPTASALSTGSPPMKNPSHPTASTLSMGLPPSRTPSHP
3 ( 988) ENPSHPTASALSTG------------------SPPMKNPSHPTASTLSMGLPPSRTPSHP
4 ( 1015) AEAAEPEARLAEVTESSNQD-------ALS-GSSDLLELLLQEDSRSGTGSAASGSLGSG
5 ( 1030) QQPKAP----LTRDEPSDTQNS----DALSTSS-----------GLLNLLLNEDLCSASG
//
0 ( 1049) TATVLSTGSPP---SESPSRTGSAASGSSDSSIYLTSSVYSSKISQNGQQSQDVQKKETF
1 ( 1049) TATVLSTGSPP---SESPSRTGSAASGSSDSSIYLTSSVYSSKISQNGQQSQDVQKKETF
2 ( 1040) TATVLSTGSPP---SESPSRTGSAASGSSDSSIYLTSSVYSSKISQNGQQSQDVQKKETF
3 ( 1030) TATVLSTGSPP---SESPSRTGSAASGSSDSSIYLTSSVYSSKISQNGQQSQDVQKKETF
4 ( 1067) LGSGSGSGSHE---GGSTSASITRSSQSSHTSKYF-GSIDSSEAEAGAARGGAEPGDQVI
5 ( 1071) SAASESLGSGSLGCDASPSGAGS--SDTSHTSKYF-GSIDSSENNHKAKMNTGMEESEHF
//
0 ( 1106) PN-VAEEPIWRMIRQTPERILMTYQVPERVKEVVLKEDLEKLESMRQQQPQFSHGQKEEL
1 ( 1106) PN-VAEEPIWRMIRQTPERILMTYQVPERVKEVVLKEDLEKLESMRQQQPQFSHGQKEEL
2 ( 1097) PN-VAEEPIWRMIRQTPERILMTYQVPERVKEVVLKEDLEKLESMRQQQPQFSHGQKEEL
3 ( 1087) PN-VAEEPIWRMIRQTPERILMTYQVPERVKEVVLKEDLEKLESMRQQQPQFSHGQKEEL
4 ( 1123) KY-VLQDPIWLLMANADQRVMMTYQVPSRDMTSVLKQDRERLRAMQKQQPRFSEDQRREL
5 ( 1128) IKCVLQDPIWLLMADADSSVMMTYQLPSRNLEAVLKEDREKLKLLQKLQPRFTESQKQEL
//
0 ( 1165) AKVYNWIQSQTVTQEIDIQACVTCENEDSADGAATSCGQVLVEDSC
1 ( 1165) AKVYNWIQSQTVTQEIDIQACVTCENEDSADGAATSCGQVLVEDSC
2 ( 1156) AKVYNWIQSQTVTQEIDIQACVTCENEDSADGAATSCGQVLVEDSC
3 ( 1146) AKVYNWIQSQTVTQEIDIQACVTCENEDSADGAATSCGQVLVEDSC
4 ( 1182) GAVHSWVRKGQLPRALDVMACVDCGSSTQDPG..............
5 ( 1188) REVHQWMQTGGLPAAIDVAECVYCENKEKGN...............
//
