# 0 Query: pF1KA0347, 1255 aa
# 1 CCDS2528.1 PER2 gene_id:8864|Hs108|chr2 (1255 aa)
# 2 CCDS11131.1 PER1 gene_id:5187|Hs108|chr17 (1290 aa)
# 3 CCDS89.1 PER3 gene_id:8863|Hs108|chr1 (1201 aa)
# 4 CCDS76097.1 PER3 gene_id:8863|Hs108|chr1 (1191 aa)
# 5 CCDS72695.1 PER3 gene_id:8863|Hs108|chr1 (1210 aa)
//
exp sw-scr id% from to
1 0 8470 100.0 1 1255
2 4.8e-46 3146 44.5 26 1240
3 4.8e-42 2194 39.1 19 1186
4 6.2e-38 2221 39.1 19 1176
5 5e-37 2187 38.8 19 1195
//
0 ( 1) MNGYAEFPPSPSNPTKEPVEPQPSQVPLQEDVDMSS-GSSGHETNENCSTGRDSQGSDCD
1 ( 1) MNGYAEFPPSPSNPTKEPVEPQPSQVPLQEDVDMSS-GSSGHETNENCSTGRDSQGSDCD
2 ( 26) ........PSPGPPQHRPC-PGPS---LADDTDANSNGSSGNESNGHESRGASQRSSHSS
3 ( -) ............................................................
4 ( -) ............................................................
5 ( -) ............................................................
//
0 ( 60) DSG--KELGMLVEPPDAR----QSPD------TFSLM--MAKSEH-NPSTSGCSSDQSSK
1 ( 60) DSG--KELGMLVEPPDAR----QSPD------TFSLM--MAKSEH-NPSTSGCSSDQSSK
2 ( 74) SSGNGKDSALLETTESSKSTNSQSPSPPSSSIAYSLL--SASSEQDNPSTSGCSSEQSAR
3 ( 19) ..........LGEESGER----WSPE-------FHLQRKLADSSH---------SEQQDR
4 ( 19) ..........LGEESGER----WSPE-------FHLQRKLADSSH---------SEQQDR
5 ( 19) ..........LGEESGER----WSPE-------FHLQRKLADSSH---------SEQQDR
//
0 ( 105) VDTHKELIKTLKELKVHLPADKKAKGKASTLATLKYALRSVKQVKANEEYYQLLMSSEGH
1 ( 105) VDTHKELIKTLKELKVHLPADKKAKGKASTLATLKYALRSVKQVKANEEYYQLLMSSEGH
2 ( 132) ARTQKELMTALRELKLRLPPERRGKGRSGTLATLQYALACVKQVQANQEYYQQWSLEEGE
3 ( 49) NRVSEELIMVVQEMKKYFPSERR--NKPSTLDALNYALRCVHSVQANSEFFQIL-SQNGA
4 ( 49) NRVSEELIMVVQEMKKYFPSERR--NKPSTLDALNYALRCVHSVQANSEFFQIL-SQNGA
5 ( 49) NRVSEELIMVVQEMKKYFPSERR--NKPSTLDALNYALRCVHSVQANSEFFQIL-SQNGA
//
0 ( 165) PCGADVPSYTVEEMESVTSEHIVKNADMFAVAVSLVSGKILYISDQVASIFHCKRDAFSD
1 ( 165) PCGADVPSYTVEEMESVTSEHIVKNADMFAVAVSLVSGKILYISDQVASIFHCKRDAFSD
2 ( 192) PCSMDMSTYTLEELEHITSEYTLQNQDTFSVAVSFLTGRIVYISEQAAVLLRCKRDVFRG
3 ( 106) P-QADVSMYSLEELATIASEHTSKNTDTFVAVFSFLSGRLVHISEQAALILNRKKDVLAS
4 ( 106) P-QADVSMYSLEELATIASEHTSKNTDTFVAVFSFLSGRLVHISEQAALILNRKKDVLAS
5 ( 106) P-QADVSMYSLEELATIASEHTSKNTDTFVAVFSFLSGRLVHISEQAALILNRKKDVLAS
//
0 ( 225) AKFVEFLAPHDVGVFHSFTSPYKLPLWSMCSGADSFTQECMEEKSFFCRVSVRKSHENEI
1 ( 225) AKFVEFLAPHDVGVFHSFTSPYKLPLWSMCSGADSFTQECMEEKSFFCRVSVRKSHENEI
2 ( 252) TRFSELLAPQDVGVFYGSTAPSRLPTWGTGASAGSGLRDFTQEKSVFCRIRGGPDRDPGP
3 ( 165) SHFVDLLAPQDMRVFYAHTARAQLPFWNNWTQRAA-RYECAPVKPFFCRIRGGEDRKQEK
4 ( 165) SHFVDLLAPQDMRVFYAHTARAQLPFWNNWTQRAAARYECAPVKPFFCRIRGGEDRKQEK
5 ( 165) SHFVDLLAPQDMRVFYAHTARAQLPFWNNWTQRAAARYECAPVKPFFCRIRGGEDRKQEK
//
0 ( 285) RYHPFRMTPYLVKVRD--QQGAESQLCCLLLAERVHSGYEAPRIPPEKRIFTTTHTPNCL
1 ( 285) RYHPFRMTPYLVKVRD--QQGAESQLCCLLLAERVHSGYEAPRIPPEKRIFTTTHTPNCL
2 ( 312) RYQPFRLTPYVTKIRV--SDGAPAQPCCLLIAERIHSGYEAPRIPPDKRIFTTRHTPSCL
3 ( 224) CHSPFRIIPYLIHVHHPAQPELESEPCCLTVVEKIHSGYEAPRIPVNKRIFTTTHTPGCV
4 ( 225) CHSPFRIIPYLIHVHHPAQPELESEPCCLTVVEKIHSGYEAPRIPVNKRIFTTTHTPGCV
5 ( 225) CHSPFRIIPYLIHVHHPAQPELESEPCCLTVVEKIHSGYEAPRIPVNKRIFTTTHTPGCV
//
0 ( 343) FQDVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQSGGQP-FDYSPIRFR
1 ( 343) FQDVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQSGGQP-FDYSPIRFR
2 ( 370) FQDVDERAAPLLGYLPQDLLGAPVLLFLHPEDRPLMLAIHKKILQLAGQP-FDHSPIRFC
3 ( 284) FLEVDEKAVPLLGYLPQDLIGTSILSYLHPEDRSLMVAIHQKVLKYAGHPPFEHSPIRFC
4 ( 285) FLEVDEKAVPLLGYLPQDLIGTSILSYLHPEDRSLMVAIHQKVLKYAGHPPFEHSPIRFC
5 ( 285) FLEVDEKAVPLLGYLPQDLIGTSILSYLHPEDRSLMVAIHQKVLKYAGHPPFEHSPIRFC
//
0 ( 402) ARNGEYITLDTSWSSFINPWSRKISFIIGRHKVRVGPLNEDVFAAHPCTEEKALHPS---
1 ( 402) ARNGEYITLDTSWSSFINPWSRKISFIIGRHKVRVGPLNEDVFAAHPCTEEKALHPS---
2 ( 429) ARNGEYVTMDTSWAGFVHPWSRKVAFVLGRHKVRTAPLNEDVFTPPAPSPAPSLDTD---
3 ( 344) TQNGDYIILDSSWSSFVNPWSRKISFIIGRHKVRTSPLNEDVFA----TKIKKMNDNDKD
4 ( 345) TQNGDYIILDSSWSSFVNPWSRKISFIIGRHKVRTSPLNEDVFA----TKIKKMNDNDKD
5 ( 345) TQNGDYIILDSSWSSFVNPWSRKISFIIGRHKVRTSPLNEDVFA----TKIKKMNDNDKD
//
0 ( 459) IQELTEQIHRLLLQPVPHSGSSGYGSLGSNGSHEHLMSQTSSSDSNGH--E------DSR
1 ( 459) IQELTEQIHRLLLQPVPHSGSSGYGSLGSNGSHEHLMSQTSSSDSNGH--E------DSR
2 ( 486) IQELSEQIHRLLLQPVHSPSPTGLCGVGAVTSPGPLHSPGSSSDSNGG--DAEGPGPPAP
3 ( 400) ITELQEQIYKLLLQPVHVSVSSGYGSLGSSGSQEQLVSIASSSEASGHRVE------ETK
4 ( 401) ITELQEQIYKLLLQPVHVSVSSGYGSLGSSGSQEQLVSIASSSEASGHRVE------ETK
5 ( 401) ITELQEQIYKLLLQPVHVSVSSGYGSLGSSGSQEQLVSIASSSEASGHRVE------ETK
//
0 ( 511) RRRA---EICKNGNKTKNRSHYSH-ESGEQKK-KSVTEMQTNPPA--EKKAVPA------
1 ( 511) RRRA---EICKNGNKTKNRSHYSH-ESGEQKK-KSVTEMQTNPPA--EKKAVPA------
2 ( 544) VTFQ---QICKDVHLVKHQGQQLF-IESRARP-QSRPRLPATGTF--KAKALPCQSPDPE
3 ( 454) AEQMTLQQVYASVNKIKNLGQQLYIESMTKSSFKPVTGTRTEPNGGGECKTFTS------
4 ( 455) AEQMTLQQVYASVNKIKNLGQQLYIESMTKSSFKPVTGTRTEPNG--GGESANG------
5 ( 455) AEQMTLQQVYASVNKIKNLGQQLYIESMTKSSFKPVTGTRTEPNG--GGESANG------
//
0 ( 558) ME---KDSLGVS-----FPEELA--------CKN----QPTCSYQQISCLDSVIRYLESC
1 ( 558) ME---KDSLGVS-----FPEELA--------CKN----QPTCSYQQISCLDSVIRYLESC
2 ( 597) LE---AGSAPVQAPLALVPEEAE--------RKE----ASSCSYQQINCLDSILRYLESC
3 ( 508) FHQTLKNNSVYT-----EPCEDL--------RND----EHSPSYQQINCIDSVIRYLKSY
4 ( 507) GG---ECKTFTS-----FHQTLKNNSVYTEPCEDLRNDEHSPSYQQINCIDSVIRYLKSY
5 ( 507) GG---ECKTFTS-----FHQTLKNNSVYTEPCEDLRNDEHSPSYQQINCIDSVIRYLKSY
//
0 ( 598) NEAATLKRKCEFPANVPALRSS-DKR--KATVSPGPHAG---EAEPPSRV--NSR---TG
1 ( 598) NEAATLKRKCEFPANVPALRSS-DKR--KATVSPGPHAG---EAEPPSRV--NSR---TG
2 ( 642) NLPSTTKRKCASSSSYTTSSAS-DDD--RQRTGPVSVGT---KKDPPSAA--LSG---EG
3 ( 551) NIPA-LKRKCISCTNTTSSSSEEDKQNHKADDVQALQAGLQIPAIPKSEMPTNGRSIDTG
4 ( 559) NIPA-LKRKCISCTNTTSSSSEEDKQNHKADDVQALQAGLQIPAIPKSEMPTNGRSIDTG
5 ( 559) NIPA-LKRKCISCTNTTSSSSEEDKQNHKADDVQALQAGLQIPAIPKSEMPTNGRSIDTG
//
0 ( 647) --------VGT-HLTSLALPGKAESVASLTSQCSYSSTIVHVGDKKPQPELE--MVEDA-
1 ( 647) --------VGT-HLTSLALPGKAESVASLTSQCSYSSTIVHVGDKKPQPELE--MVEDA-
2 ( 691) ATPRKEPVVGG-TLSPLALANKAESVVSVTSQCSFSSTIVHVGDKKP-PESDIIMMEDLP
3 ( 610) --------GGAPQILSTAM----LSLGSGISQCGYSSTIVHV----PPPETA--RDATL-
4 ( 618) --------GGAPQILSTAM----LSLGSGISQCGYSSTIVHV----PPPETA--RDATL-
5 ( 618) --------GGAPQILSTAM----LSLGSGISQCGYSSTIVHV----PPPETA--RDATL-
//
0 ( 695) --ASGPESLDCLAGPALACGLSQEKEP--FKKLGLTKEVLAAHTQKEEQSFLQKFKEIRK
1 ( 695) --ASGPESLDCLAGPALACGLSQEKEP--FKKLGLTKEVLAAHTQKEEQSFLQKFKEIRK
2 ( 749) GLAPGPAP-----SPAPSPTVAPDPAPDAYRPVGLTKAVLSLHTQKEEQAFLSRFRDLGR
3 ( 651) --FCEPWTLNMQPAP-----LTSEE----FKHVGLTAAVLSAHTQKEEQNYVDKFRE---
4 ( 659) --FCEPWTLNMQPAP-----LTSEE----FKHVGLTAAVLSAHTQKEEQNYVDKFRE---
5 ( 659) --FCEPWTLNMQPAP-----LTSEE----FKHVGLTAAVLSAHTQKEEQNYVDKFRE---
//
0 ( 751) LSIFQSHCHYYLQERSKGQPSERTAPGLRNTSGIDSPWKKTGKNRKLKSKRVKPRDSSES
1 ( 751) LSIFQSHCHYYLQERSKGQPSERTAPGLRNTSGIDSPWKKTGKNRKLKSKRVKPRDSSES
2 ( 804) L---------------RGLDSSSTAPSALGERGCHHGPAPPSRRHHCRSKAKRSRHHQN-
3 ( 697) -KILSSPYSSYLQQESRSKAKYSYFQGDSTSKQTRSAGCRKGKHKR--KKLPEPPDSSSS
4 ( 705) -KILSSPYSSYLQQESRSKAKYSYFQGDSTSKQTRSAGCRKGKHKR--KKLPEPPDSSSS
5 ( 705) -KILSSPYSSYLQQESRSKAKYSYFQGDSTSKQTRSAGCRKGKHKR--KKLPEPPDSSSS
//
0 ( 811) -TGSGGPVSARPPLVGLNATAWSPSDTS--QSSCPAV-PFPAPVP--AAYSLPVF-PAPG
1 ( 811) -TGSGGPVSARPPLVGLNATAWSPSDTS--QSSCPAV-PFPAPVP--AAYSLPVF-PAPG
2 ( 848) ------PRAEAPCYVSHPSPV--PPSTP--WPTPPATTPFPAVVQ--P-YPLPVFSPRGG
3 ( 754) NTGSGPRRGAHQ-----NAQPCCPSAASSPHTSSPTF-PPAAMVPSQAPYLVPAF-PLPA
4 ( 762) NTGSGPRRGAHQ-----NAQPCCPSAASSPHTSSPTF-PPAAMVPSQAPYLVPAF-PLPA
5 ( 762) NTGSGPRRGAHQ-----NAQPCCPSAASSPHTSSPTF-PPAAMVPSQAPYLVPAF-PLPA
//
0 ( 864) TVAAPPAPPHASFTVPAVPVDLQHQFAVQP-PPFPAP-LA-PVMAFMLPSYSF-PSGTPN
1 ( 864) TVAAPPAPPHASFTVPAVPVDLQHQFAVQP-PPFPAP-LA-PVMAFMLPSYSF-PSGTPN
2 ( 895) PQPLPPAPT----SVP-------------P-AAFPAP-LVTPMVALVLPNYLF-PTPS-S
3 ( 807) ATS-PGREYAAPGTAPEGLHGLPLSEGLQPYPAFPFPYLD-TFMTVFLPDPPVCPLLSPS
4 ( 815) ATS-PGREYAAPGTAPEGLHGLPLSEGLQPYPAFPFPYLD-TFMTVFLPDPPVCPLLSPS
5 ( 815) ATS-PGREYAAPGTAPEGLHGLPLSEGLQPYPAFPFPYLD-TFMTVFLPDPPVCPLLSPS
//
0 ( 920) -LPQAFFPSQPQFPSHPTLTSEMASASQPEFPSRTSIPRQPCACPATRATPPSAMGRASP
1 ( 920) -LPQAFFPSQPQFPSHPTLTSEMASASQPEFPSRTSIPRQPCACPATRATPPSAMGRASP
2 ( 934) -YPYGALQTPAEGPPTP------ASHS----PS----PSLPALAP----SPPH---RPDS
3 ( 865) FLPCPFLGATASSAISPSMSSAMSPTLDPP-PSVTSQRREEEKWEA------QSEGH---
4 ( 873) FLPCPFLGATASSAISPSMSSAMSPTLDPP-PSVTSQRREEEKWEA------QSEGH---
5 ( 873) FLPCPFLGATASSAISPSMSSAMSPTLDPP-PSVTSQRREEEKWEA------QSEGH---
//
0 ( 979) PLFQSRSSSPLQLNLLQLEEAPEG-GTGA----MGTTGATE---TAAV----GADCKPGT
1 ( 979) PLFQSRSSSPLQLNLLQLEEAPEG-GTGA----MGTTGATE---TAAV----GADCKPGT
2 ( 972) PLFNSRCSSPLQLNLLQLEELPRAEGAAV----AGGPGSS-------------AGPPPPS
3 ( 915) PFITSRSSSPLQLNLLQ-EEMPRP-SESPDQMRRNTCPQTEYCVTGNN----GSESSPAT
4 ( 923) PFITSRSSSPLQLNLLQ-EEMPRP-SESPDQMRRNTCPQTEYCVTGNN----GSESSPAT
5 ( 923) PFITSRSSSPLQLNLLQ-EEMPRP-SESPDQMRRNTCPQTE---YQCVTGNNGSESSPAT
//
0 ( 1027) SRDQQPKAPLTRDEPSDTQNSDALSTSS-----------GLLNLLLNEDLCSAS----GS
1 ( 1027) SRDQQPKAPLTRDEPSDTQNSDALSTSS-----------GLLNLLLNEDLCSAS----GS
2 ( 1015) AEAAEPEARLA--EVTESSNQDALSGSS-----------DLLELLLQEDSRSGT----GS
3 ( 969) TGALSTGSP-PRENPSHPTAS-ALSTGS-----------PPMK---NPSHPTASALSTGS
4 ( 977) TGALSTGSP-PRENPSHPTAS-ALSTGSPPMKNPSHPTASTLSMGLPPSRTPSH----PT
5 ( 978) TGALSTGSP-PRENPSHPTAS-ALSTGS-----------PPMK---NPSHPTASALSTGS
//
0 ( 1072) ----------AASESLG----------------SGSLGCDASPSGAG---------S--S
1 ( 1072) ----------AASESLG----------------SGSLGCDASPSGAG---------S--S
2 ( 1058) ----------AASGSLG----------------SGLGSGSGSGSHEGGSTSASITRS--S
3 ( 1013) PPMKNPSHPTASTLSMGLPPSRTPSHPTATVLSTGSPPSE-SPSRTG---------SAAS
4 ( 1031) ----------ATVLSTG----------------SPP---SESPSRTG---------SAAS
5 ( 1022) PPMKNPSHPTASTLSMGLPPSRTPSHPTATVLSTGSPPSE-SPSRTG---------SAAS
//
0 ( 1095) DTSHTSKYF-GSIDSSENNHKAKMNTGMEESEHFIKCVLQDPIWLLMADADSSVMMTYQL
1 ( 1095) DTSHTSKYF-GSIDSSENNHKAKMNTGMEESEHFIKCVLQDPIWLLMADADSSVMMTYQL
2 ( 1090) QSSHTSKYF-GSIDSSEAEAGAARG-GAEPGDQVIKYVLQDPIWLLMANADQRVMMTYQV
3 ( 1063) GSSDSSIYLTSSVYSSKISQNGQQSQDVQKKETF-PNVAEEPIWRMIRQTPERILMTYQV
4 ( 1053) GSSDSSIYLTSSVYSSKISQNGQQSQDVQKKETF-PNVAEEPIWRMIRQTPERILMTYQV
5 ( 1072) GSSDSSIYLTSSVYSSKISQNGQQSQDVQKKETF-PNVAEEPIWRMIRQTPERILMTYQV
//
0 ( 1154) PSRNLEAVLKEDREKLKLLQKLQPRFTESQKQELREVHQWMQTGGLPAAIDVAECVYC--
1 ( 1154) PSRNLEAVLKEDREKLKLLQKLQPRFTESQKQELREVHQWMQTGGLPAAIDVAECVYC--
2 ( 1148) PSRDMTSVLKQDRERLRAMQKQQPRFSEDQRRELGAVHSWVRKGQLPRALDVMACVDCGS
3 ( 1122) PERVKEVVLKEDLEKLESMRQQQPQFSHGQKEELAKVYNWIQSQTVTQEIDIQACVTC--
4 ( 1112) PERVKEVVLKEDLEKLESMRQQQPQFSHGQKEELAKVYNWIQSQTVTQEIDIQACVTC--
5 ( 1131) PERVKEVVLKEDLEKLESMRQQQPQFSHGQKEELAKVYNWIQSQTVTQEIDIQACVTC--
//
0 ( 1212) ENKEKGNICIPYEEDIPSLGLSEVSDTKEDENGSPLNHRIEEQT
1 ( 1212) ENKEKGNICIPYEEDIPSLGLSEVSDTKEDENGSPLNHRIEEQT
2 ( 1208) STQDPGHPDDPLFSELDGLGL-EPMEEGGGEQGS..........
3 ( 1180) ENEDSAD.....................................
4 ( 1170) ENEDSAD.....................................
5 ( 1189) ENEDSAD.....................................
//
