information on T3E15    (98966..101050)

Direction: +

Frame: 2

ORF

    98957..101212  (Met: 98975 99029 99077 99155 99626 99652 99703 99730 100077 100221 100472 100487 100514 100550 100643 100727 100757 100769 100787 101207 99194 99223 99309 99647 100060 100251)
AYCYKVMPFGLKNAGATYQRLVNRMFADQLGKTIEVYIDDMLVKSAREKEHVQQLRECFK
ILNKFEMKLNPEKCSFRVP*RIPRIPSN*EASRPILSRLQPSSTCHRQKRHGRSNV*GRI
AALNRFISRCTDKCVPFYQLLRKDKKFDWNEDCEQAIKQLKAYLSEPPILAKPEEGEPLY
LYTAVSRTAISGVLVREDHEGQKPIYYVSKTLIDAETRYPAMEKLALA*MSARKLRPYFQ
SHPIVVMTSQPIRTIMHSPTQSGRVAKWAIELSEYDIEYRTSTSLKAQVLADFVIELPLA
DLDGTNSNKKWLLHVDGSSNQQGSGVGIQLTSPTGEVSEQSFQLGLYASNNESEYEALIA
GIKIA*NDERMEAYLKLVKIPKGENTSVDGLAALASTSDPFVKRIIPVEGIEHPSIDLMV
KHAGTKTR*HHPVARALAAAAEIGAAEEEPELGTPEQPTSYKPEPYNDLRIPIIDYIERG
ITPPDKWETRKLKAQSAGYCIMEGRLMKRNIAGPYMVCTYGQQTKDLMKSKREGQCGSHC
SGRTLALRVKKQGYFWPTMLADCIAHSLRCDKCQRHAPALHQPPEEMSSISSPYPFMKWS
MDVVGPMEASGGKKRLKNLLVLTDYSTKWIEAKSFQQVTEKQVEDFVWENIICRHGIPYE
IVTDNGTNLTSGKIKAFCDKWKIRLTTSTPRYPQGRQKPPTKLYLTTSRKDLIPKNQCGP
TCSTEFSGPNELHLASQHKKHCSLSPMV

GenBank annotation

    None

BLASTX cluster

    93864..101553    cluster 33    75 hits for protein gene

BLASTN cluster

    None

GENSCAN

    93864..101613    gene model 26
    73825..76313    gene model 20

    Suboptimal exon

        99219..99594    Intr    Phase: 1    Score: 0.186
        99219..99646    Term    Phase: 1    Score: 0.155
        100114..101051    Intr    Phase: 2    Score: 0.209
        100178..101051    Intr    Phase: 0    Score: 0.261

Grail



    Shadow exon

        98975..99047    exon    Phase: 0    Score: 21
        100782..100879    exon    Phase: 1    Score: 37



Exon-Intron boundary candidatates



Acceptor




99028 [0.035] (2)
99048 [0.005] (1)
99187 [0.011] (2)
99254 [0.087] (0)




99261 [0.016] (1)
99349 [0.006] (2)
99380 [0.014] (0)
99447 [0.001] (1)




99516 [0.004] (1)
99603 [0.002] (1)
99738 [0.002] (1)
99752 [0.003] (0)




99797 [0.002] (0)
99810 [0.001] (1)
99829 [0.080] (2)
99931 [0.016] (2)




100195 [0.002] (2)
100201 [0.004] (2)
100284 [0.015] (1)
100287 [0.007] (1)




100299 [0.005] (1)
100506 [0.006] (1)
100662 [0.003] (1)
100675 [0.063] (2)




100763 [0.006] (0)
100782 [0.283] (1)
100880 [0.048] (0)




Donor



98971 [0.016] (0)
99047 [0.196] (1)
99087 [0.029] (2)
99298 [0.004] (0)



99336 [0.99N/0.819] (2)
99348 [0.116] (2)
99544 [0.380] (0)
99583 [0.019] (0)



99653 [0.128] (1)
99751 [0.011] (0)
99781 [0.017] (0)
99972 [0.099] (2)



100025 [0.003] (1)
100156 [0.124] (0)
100347 [0.013] (2)
100362 [0.005] (2)



100461 [0.061] (2)
100505 [0.102] (1)
100516 [0.004] (0)
100577 [0.007] (1)



100674 [0.063] (2)
100799 [0.007] (1)
100879 [0.88N/0.456] (0)
100906 [0.004] (0)



101051 [0.92N/0.926] (1)
101174 [0.007] (1)










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