BLASTX alignment cluster 19    (54432..57661)

Local alignments in this cluster

gi|3746069[fasta] (AC005311) putative reverse transcriptase [Arabidopsis thaliana]
Length 1231 aa
position (link: detail on the area) subject position direction score
54551..54438 (1185..1222) - 123
54720..54601 (1146..1185) - 144
54929..54699 (1076..1152) - 250
55113..54925 (1008..1070) - 152
55435..55160 (902..993) - 310
55828..55430 (757..889) - 292
56040..55831 (686..755) - 176
56347..56003 (583..697) - 353
56442..56320 (551..591) - 140
56792..56451 (434..547) - 403
57008..56805 (67..134) - 272
57161..57006 (1..52) - 224

gi|3327392[fasta] (AC004483) reverse-transcriptase-like protein [Arabidopsis thaliana]
Length 970 aa
position (link: detail on the area) subject position direction score
54551..54438 (924..961) - 131
54720..54601 (885..924) - 143
54929..54699 (815..891) - 249
55113..54925 (747..809) - 163
55435..55190 (643..724) - 258
55495..55430 (609..630) - 62
55828..55634 (539..603) - 180
55899..55828 (515..538) - 85
56347..56048 (415..514) - 287
56792..56526 (284..372) - 780

gi|2244915|emb|CAB10337.1|[fasta] (Z97339) strong homology to reverse transcriptase [Arabidopsis thaliana]
Length 929 aa
position (link: detail on the area) subject position direction score
55435..55310 (820..861) - 139
55684..55424 (723..809) - 127
55828..55736 (692..722) - 115
56040..55834 (621..689) - 171
56347..56003 (518..632) - 379
56792..56451 (386..499) - 437
56987..56862 (1..42) - 251

gi|4544460|gb|AAD22368.1|AC006592_25[fasta] (AC006592) putative reverse transcriptase [Arabidopsis thaliana]
Length 321 aa
position (link: detail on the area) subject position direction score
54551..54438 (275..312) - 141
54720..54601 (236..275) - 156
54929..54699 (166..242) - 290
55113..54925 (98..160) - 221
55411..55160 (1..84) - 219

gi|3860246[fasta] (AC005824) putative reverse-transcriptase protein [Arabidopsis thaliana]
gi|4510429|gb|AAD21515.1| (AC006929) putative reverse transcriptase [Arabidopsis thaliana]
Length 314 aa
position (link: detail on the area) subject position direction score
54551..54438 (268..305) - 120
54720..54601 (229..268) - 141
54929..54699 (159..235) - 341
54969..54925 (139..153) - 55
55113..55006 (90..125) - 147
55366..55109 (3..88) - 119

gi|3513745[fasta] (AF080118) contains similarity to reverse trancriptase (Pfam: rvt.hmm, score: 42.57) [Arabidopsis thaliana]
Length 1662 aa
position (link: detail on the area) subject position direction score
55423..55235 (1362..1424) - 75
55971..55840 (1228..1271) - 99
56338..56003 (1105..1216) - 165
56792..56451 (953..1066) - 259
57203..57009 (466..530) - 85
57434..57240 (390..454) - 51

gi|4432866|gb|AAD20714|[fasta] (AC006300) putative reverse transcriptase [Arabidopsis thaliana]
Length 1750 aa
position (link: detail on the area) subject position direction score
55429..55235 (1426..1490) - 78
55971..55840 (1228..1271) - 95
56263..56024 (1130..1209) - 145
56792..56451 (953..1066) - 255
57203..57009 (466..530) - 81
57434..57240 (390..454) - 442

gi|2583130[fasta] (AC002387) putative reverse transcriptase [Arabidopsis thaliana]
Length 1374 aa
position (link: detail on the area) subject position direction score
55426..55232 (1053..1117) - 86
55750..55667 (917..944) - 66
55965..55840 (848..889) - 80
56338..56024 (723..827) - 106
56786..56451 (573..684) - 256
57158..57009 (100..149) - 84
57407..57240 (18..73) - 59

gi|4539357|emb|CAB40051.1|[fasta] (AL049525) putative protein [Arabidopsis thaliana]
Length 1294 aa
position (link: detail on the area) subject position direction score
55753..55703 (1278..1294) - 45
55971..55840 (1208..1251) - 99
56338..56003 (1085..1196) - 165
56451..56335 (1047..1085) - 48
56792..56451 (933..1046) - 259
57203..57009 (446..510) - 85
57461..57240 (361..434) - 75

gi|4522005|gb|AAD21778.1|[fasta] (AC007069) putative reverse transcriptase [Arabidopsis thaliana]
Length 1715 aa
position (link: detail on the area) subject position direction score
55423..55178 (1388..1469) - 85
55965..55840 (1192..1233) - 73
56341..56009 (1084..1194) - 137
56786..56451 (935..1046) - 246
57158..56994 (462..516) - 96
71210..71022 (117..179) - 91
71381..71217 (62..116) - 75

gi|2244916|emb|CAB10338.1|[fasta] (Z97339) hypothetical protein [Arabidopsis thaliana]
Length 655 aa
position (link: detail on the area) subject position direction score
57431..57015 (517..655) - 456
57475..57410 (502..523) - 77
57795..57661 (430..474) - 94
71408..70917 (109..272) - 171

gi|2708743[fasta] (AC003952) putative Tal-1-like reverse transcriptase [Arabidopsis thaliana]
Length 1365 aa
position (link: detail on the area) subject position direction score
55756..55673 (914..941) - 69
56010..55840 (832..888) - 106
56338..56003 (722..833) - 159
56466..56335 (679..722) - 39
56792..56451 (570..683) - 253
56999..56958 (167..180) - 43
57182..57009 (91..148) - 59
57431..57240 (9..72) - 72
57448..57416 (3..13) - 112

gi|4557078|gb|AAD22517.1|AC007045_17[fasta] (AC007045) putative Ta11-1 pol polyprotein, 5' partial [Arabidopsis thaliana]
Length 964 aa
position (link: detail on the area) subject position direction score
55756..55667 (581..610) - 73
56016..55840 (497..555) - 104
56338..56000 (389..501) - 127
56466..56335 (346..389) - 56
56792..56451 (237..350) - 45

gi|4335720|gb|AAD17398|[fasta] (AC006248) putative reverse transcriptase Tal-1 [Arabidopsis thaliana]
Length 1225 aa
position (link: detail on the area) subject position direction score
55426..55232 (925..989) - 89
55998..55840 (717..769) - 100
56792..56451 (518..631) - 244
57203..56997 (85..153) - 101
57431..57243 (10..72) - 120

gi|4263655|gb|AAD15377|[fasta] (AC006136) putative reverse transcriptase [Arabidopsis thaliana]
Length 1044 aa
position (link: detail on the area) subject position direction score
55756..55676 (741..767) - 51
56010..55840 (659..715) - 93
56338..56003 (549..660) - 180
56798..56451 (395..510) - 282

gi|2213608[fasta] (AC000103) F21J9.2 [Arabidopsis thaliana]
Length 1048 aa
position (link: detail on the area) subject position direction score
55756..55673 (881..908) - 58
56007..55840 (800..855) - 111
56338..56018 (689..795) - 112
56466..56317 (646..695) - 67
56792..56451 (537..650) - 227
56996..56946 (135..151) - 43
57146..56988 (70..122) - 74
57353..57240 (2..39) - 71

gi|4538901|emb|CAB39638.1|[fasta] (AL049482) RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
Length 1274 aa
position (link: detail on the area) subject position direction score
55756..55676 (850..876) - 75
55908..55840 (801..823) - 53
56338..56003 (664..775) - 155
56466..56335 (621..664) - 37
56798..56451 (510..625) - 270

gi|4262184|gb|AAD14501|[fasta] (AC005508) 61760 [Arabidopsis thaliana]
Length 158 aa
position (link: detail on the area) subject position direction score
54551..54432 (112..151) - 95
54723..54601 (72..112) - 150
54887..54696 (17..80) - 286

gi|2618693[fasta] (AC002510) putative zinc-finger protein [Arabidopsis thaliana]
Length 1094 aa
position (link: detail on the area) subject position direction score
55756..55673 (644..671) - 64
56010..55840 (562..618) - 83
56338..56003 (452..563) - 144
56792..56451 (300..413) - 78

gi|4006833[fasta] (AC005970) putative reverse transcriptase [Arabidopsis thaliana]
Length 1352 aa
position (link: detail on the area) subject position direction score
56031..55867 (994..1048) - 85
56260..56024 (917..995) - 158
56442..56338 (857..891) - 44
56477..56451 (845..853) - 46
56786..56514 (743..833) - 134

gi|2129709|pir||S65812[fasta] reverse transcriptase - Arabidopsis thaliana retrotransposon Ta11-1
gi|976278 (L47193) reverse transcriptase [Arabidopsis thaliana]
Length 1333 aa
position (link: detail on the area) subject position direction score
55756..55673 (917..944) - 59
56010..55840 (835..891) - 112
56326..55997 (729..838) - 102
56466..56317 (682..731) - 53
56786..56451 (575..686) - 64

gi|4263828|gb|AAD15471|[fasta] (AC006067) putative reverse transcriptase [Arabidopsis thaliana]
Length 1277 aa
position (link: detail on the area) subject position direction score
56043..55867 (985..1043) - 83
56260..56024 (912..990) - 141
56786..56523 (738..825) - 48

gi|3193294[fasta] (AF069298) similar to reverse transcriptases (Pfam: rvt.hmm, score: 53.76) [Arabidopsis thaliana]
Length 657 aa
position (link: detail on the area) subject position direction score
55759..55664 (457..488) - 68
56043..55867 (384..442) - 85
56260..56024 (311..389) - 139
56786..56523 (137..224) - 233

gi|3004545[fasta] (AC003673) putative reverse transcriptase [Arabidopsis thaliana]
gi|4185148 (AC005724) putative reverse transcriptase [Arabidopsis thaliana]
Length 1412 aa
position (link: detail on the area) subject position direction score
56031..55867 (1102..1156) - 73
56260..56015 (1025..1106) - 132
56477..56319 (953..1005) - 47
56609..56517 (910..940) - 77
56786..56640 (862..910) - 252

gi|3695376[fasta] (AF096370) contains similarity to Arabidopsis thaliana reverse transcriptase-like proteins [Arabidopsis thaliana]
Length 382 aa
position (link: detail on the area) subject position direction score
56043..55867 (260..318) - 77
56260..56024 (187..265) - 128
56786..56514 (46..136) - 45

gi|3738337[fasta] (AC005170) putative reverse transcriptase [Arabidopsis thaliana]
Length 1216 aa
position (link: detail on the area) subject position direction score
56031..55867 (568..622) - 75
56260..56024 (491..569) - 128
56436..56338 (433..465) - 39
56477..56451 (419..427) - 46
56786..56514 (317..407) - 86

gi|3319372[fasta] (AF077409) similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13) [Arabidopsis thaliana]
Length 1164 aa
position (link: detail on the area) subject position direction score
55723..55637 (838..866) - 60
56260..56003 (660..745) - 149
56789..56556 (486..563) - 227
56999..56946 (74..91) - 153

gi|2244803|emb|CAB10226.1|[fasta] (Z97336) reverse transcriptase-like protein [Arabidopsis thaliana]
Length 318 aa
position (link: detail on the area) subject position direction score
56043..55885 (262..314) - 79
56260..56147 (206..243) - 77
56786..56529 (32..117) - 73

gi|3461840[fasta] (AC005315) putative reverse transcriptase [Arabidopsis thaliana]
Length 1529 aa
position (link: detail on the area) subject position direction score
56260..56012 (1067..1149) - 145
56786..56523 (893..980) - 213
71276..71025 (129..212) - 53

gi|3377824[fasta] (AF075598) contains similarity to reverse transcriptases [Arabidopsis thaliana]
Length 1077 aa
position (link: detail on the area) subject position direction score
56016..55840 (766..824) - 95
56338..56003 (658..769) - 161
56798..56640 (545..597) - 38

gi|3892061|gb|AAC78274.1|AAC78274[fasta] (AC002330) putative reverse transcriptase [Arabidopsis thaliana]
Length 543 aa
position (link: detail on the area) subject position direction score
56260..56024 (311..389) - 139
56786..56523 (137..224) - 63

gi|4512630|gb|AAD21699.1|[fasta] (AC004793) Contains reverse transcriptase domain (rvt) PF|00078. [Arabidopsis thaliana]
Length 1253 aa
position (link: detail on the area) subject position direction score
55735..55655 (808..834) - 61
56212..56003 (712..781) - 105
56789..56556 (542..619) - 72

gi|3047086[fasta] (AF058914) similar to reverse transcriptase (Pfam: transcript_fact.hmm, score: 72.31) [Arabidopsis thaliana]
Length 928 aa
position (link: detail on the area) subject position direction score
56341..56015 (631..739) - 137
56477..56451 (586..594) - 36
56786..56514 (484..574) - 77

gi|1402881|emb|CAA66812|[fasta] (X98130) non-ltr retrotransposon reverse transcriptase-like protein [Arabidopsis thaliana]
Length 893 aa
position (link: detail on the area) subject position direction score
56191..56009 (782..842) - 73
56789..56556 (590..667) - 67

gi|976284[fasta] (L47194) reverse transcriptase [Arabidopsis thaliana]
Length 198 aa
position (link: detail on the area) subject position direction score
56792..56580 (126..196) - 38

gi|4325364|gb|AAD17361|[fasta] (AF128395) contains similarity to reverse transcriptases: partial CDS [Arabidopsis thaliana]
Length 392 aa
position (link: detail on the area) subject position direction score
56043..55873 (207..263) - 60
56251..56024 (137..212) - 113
56786..56574 (24..94) - 112

gi|3779023[fasta] (AC005171) probable splicing factor [Arabidopsis thaliana]
Length 117 aa
position (link: detail on the area) subject position direction score
54551..54432 (71..110) - 123
54705..54601 (37..71) - 144
54752..54699 (21..38) - 60
54902..54819 (1..28) - 124

gi|2129716|pir||S65815[fasta] reverse transcriptase - Arabidopsis thaliana retrotransposon Ta28 (fragment)
Length 183 aa
position (link: detail on the area) subject position direction score
56792..56601 (120..183) - 130

gi|4262158|gb|AAD14458|[fasta] (AC005275) hypothetical protein [Arabidopsis thaliana]
Length 1285 aa
position (link: detail on the area) subject position direction score
54805..54930 (76..117) + 67
84960..85184 (246..320) + 147
85316..85489 (364..421) + 120
85566..85724 (448..500) + 64

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