information on T3E15    (54969..54925)

Direction: -

Frame: 1

ORF

    55215..54739  (Met: 55155 55140 54996 54981 54828 54804)
GKDKLFFLSPYLSGSSVTWAMERLLMGAPGRRSLLWLGWKWQCGNIFGTNAKCRDRVRFL
KDYAKEVIIAQTSMSLQNMQVVREDRLIKWVSPREGWCFPWEPGSCNSEWCSARRAWELA
WRFCFKHRYMFGSIGGVMGCILQTIHSLGDADYKIGVRS

GenBank annotation

    None

BLASTX cluster

    54929..54601    cluster 18    1 hits for protein gene

BLASTN cluster

    None

GENSCAN

    57825..52648    gene model 16
    43192..50804    gene model 15
    Suboptimal exon

        55155..54999    Init    Phase: 0    Score: 0.249

Grail

    54828..54736    exon    Phase: 0    Score: 26
    55155..54736    exon    Phase: 0    Score: 56

Exon-Intron boundary candidatates

Acceptor
54775 [0.001] (2) 54832 [0.011] (2) 54929 [0.002] (1) 54934 [0.011] (2)
54975 [0.65N/0.041] (0) 55002 [0.011] (0) 55032 [0.001] (0) 55054 [0.005] (2)
55166 [0.028] (1) 55189 [0.337] (2)
Donor
54833 [0.74N/0.508] (2) 54976 [0.282] (0) 54999 [0.085] (1) 55018 [0.81N/0.005] (0)
55109 [0.004] (2) 55128 [0.011] (1)

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Entrance