information on T3E15
(54969..54925)
Direction: -
Frame: 1
ORF
55215..54739 (Met: 55155 55140 54996 54981 54828 54804)
GKDKLFFLSPYLSGSSVTWAMERLLMGAPGRRSLLWLGWKWQCGNIFGTNAKCRDRVRFL
KDYAKEVIIAQTSMSLQNMQVVREDRLIKWVSPREGWCFPWEPGSCNSEWCSARRAWELA
WRFCFKHRYMFGSIGGVMGCILQTIHSLGDADYKIGVRS
GenBank annotation
None
BLASTX cluster
54929..54601 cluster 18 1 hits for protein gene
BLASTN cluster
None
GENSCAN
57825..52648 gene model 16
43192..50804 gene model 15
Suboptimal exon
55155..54999 Init Phase: 0 Score: 0.249
Grail
54828..54736 exon Phase: 0 Score: 26
55155..54736 exon Phase: 0 Score: 56
Exon-Intron boundary candidatates
Acceptor |
54775 [0.001] (2) |
54832 [0.011] (2) |
54929 [0.002] (1) |
54934 [0.011] (2) |
54975 [0.65N/0.041] (0) |
55002 [0.011] (0) |
55032 [0.001] (0) |
55054 [0.005] (2) |
55166 [0.028] (1) |
55189 [0.337] (2) |
Donor |
54833 [0.74N/0.508] (2) |
54976 [0.282] (0) |
54999 [0.085] (1) |
55018 [0.81N/0.005] (0) |
55109 [0.004] (2) |
55128 [0.011] (1) |
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Entrance