information on T3E15    (43957..44805)

Direction: +

Frame: 1

ORF

    43909..44833  (Met: 44014 44044 44056 44293 44305 44020 44031 44039 44647 44679)
TTEKLPDPGSFVLDCSISTSKFSRSLCDLGSSINLMP*CC*D*MTNYMPTRITLLFADRS
KRIPEGIFEDVPVKVGNSVIPADFVVLDYEKEPKDPLILERAFLATADARFDVKRGRISL
KVYDLEMKFGMDGSELTKTISSIDSSTYTPSKTAQNPTTEPHTTLQSAQLANESCNATGS
IDTTTHVDRHPRDSQTEGSAQPLQPTPLQALCDKFSSISSPALPSTNSLDSSKSASQDNK
PRVL*ACFSCCSCR*RRVSIDTPLSVDRHLQLLRPDLSTDRLRRPGGSNNPPPLHHILNS
AKSSY

GenBank annotation

    None

BLASTX cluster

    33209..45210    cluster 12    56 hits for protein gene

BLASTN cluster

    None

GENSCAN

    43192..50804    gene model 15
    42713..39087    gene model 14

    Suboptimal exon

        44044..44506    Init    Phase: 0    Score: 0.443
        44044..44640    Init    Phase: 0    Score: 0.140
        44678..44874    Term    Phase: 1    Score: 0.647

Grail

    43803..43908    exon    Phase: 2    Score: 22
    44044..44649    exon    Phase: 0    Score: 70
    44678..44871    exon    Phase: 1    Score: 90

Exon-Intron boundary candidatates

Acceptor
43934 [0.005] (1) 44042 [0.015] (1) 44137 [0.002] (0) 44188 [0.003] (0)
44217 [0.001] (2) 44293 [0.001] (0) 44318 [0.010] (1) 44352 [0.002] (2)
44380 [0.019] (0) 44393 [0.005] (1) 44450 [0.143] (1) 44500 [0.002] (0)
44603 [0.008] (1) 44678 [0.994] (1) 44689 [0.004] (0) 44732 [0.004] (1)
44745 [0.002] (2) 44757 [0.063] (2) 44775 [0.002] (2)
Donor
43933 [0.817] (1) 44136 [0.076] (0) 44140 [0.011] (1) 44243 [0.127] (2)
44260 [0.065] (1) 44277 [0.097] (0) 44548 [0.010] (1)

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