information on T27D20
(77058..77008)
Direction: -
Frame: 2
ORF
77997..76780 (Met: 77730 77715 77535 77181 77154 77103 77094 76944)
QSLPERQLPITAHRSPRRINFWKQVAIIHGRFRRLQPDHDEPRGSRKNRILHGTRHLLLP
IGLKNAGATYQRFVNKIFALQIKKTIEVYMLVKSMAEEEHVSHLRECFQQLNLYNVKLNP
AKCRFRVRSGEFLGYLVTHRGIEANPKQIEALLGMASPQNKREVQRLTERVAALNRFISR
STDKCLAFYDVLRGNKKFEWTTRCGEAFQELKKYLATPPILAKPVIREPLYLYIAVSDTA
VSGVLIREDRGEQKPIFYVSQTFTGAESCYPQMEKLALAVIMSARKLRPYCQSHSIIVMG
SMPLRAILHSPSQSGRLAKWAIKLSEYDIEYRNKTCAKSQVLADFIVKLPFMEARENPLD
TTWLLHVDGSSSKQSLGVGIRLTSPTGEVLEQSFRLNFEGTNNVAE
GenBank annotation
None
BLASTX cluster
80273..75168 cluster 17 61 hits for protein gene
BLASTN cluster
None
GENSCAN
80389..75165 gene model 16
Suboptimal exon
77944..76780 Term Phase: 2 Score: 0.181
77944..76789 Intr Phase: 2 Score: 0.251
Grail
77285..76777 exon Phase: 1 Score: 86
77535..76777 exon Phase: 0 Score: 33
Exon-Intron boundary candidatates
Acceptor |
76799 [0.003] (1) |
76862 [0.045] (1) |
76895 [0.002] (1) |
76938 [0.006] (0) |
76977 [0.009] (0) |
77068 [0.004] (2) |
77159 [0.007] (1) |
77214 [0.035] (0) |
77252 [0.001] (1) |
77276 [0.006] (1) |
77285 [0.013] (1) |
77370 [0.009] (0) |
77502 [0.002] (0) |
77520 [0.002] (0) |
77537 [0.003] (1) |
77620 [0.005] (2) |
77636 [0.002] (1) |
77667 [0.018] (0) |
77670 [0.003] (0) |
77708 [0.036] (1) |
77754 [0.176] (0) |
77885 [0.012] (1) |
77992 [0.001] (2) |
Donor |
76834 [0.023] (0) |
76978 [0.011] (0) |
77021 [0.020] (2) |
77205 [0.012] (1) |
77326 [0.043] (0) |
77597 [0.009] (2) |
77620 [0.076] (0) |
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Entrance