information on T25K17
(19453..21047)
Direction: +
Frame: 1
ORF
19312..21053 (Met: 19417 19432 19435 19585 20050 20643 20682 20694 20835 20985 21033 19624 19941 20042 20098 20112 20204 20212)
LQHTSLSLNLSPSLSPIVFLELSRVTCQVRSSKKKMGLPLMMERSSNNNNVELSRVAVSD
THGEDSPYFAGWKAYDENPYDESHNPSGVIQMGLAENQVIKSFI*NFFLLIVIYCDNVLI
VSFDHFFPTNRSRLIFLKLTWRRRIQKVRCGDQKELLGSVKTHCFKTTTVSKLSDKPWLV
SWNRFEEAKLDLILTGSSSPPEPPPLTNS*FILADPNDALLVPTPYYPGYVTLYNKIYNE
LN*NMVIRIYEDKLQRNSCN*NTI*ESYNLANLLFSIFNALYLPNRLFISLQIR*I*WRT
GVKIVPIHCDSSNHFQITPEALESAYQTARDANIRVRGVLITNPSNPLGATVQKKVLEDL
LDFCVRKNIHLVSDEIYSGSVFHASEFTSVAEIVENIDDVSVKERVHIVYSLSKDLGLPG
FRVGTIYSYNDNVVRTARRMSSFTLVSSQTQHMLASMLSDEEFTEKYIRINRERLRRRYD
TIVEGLKKAGIECLKGNAGLFCWMNLGFLLEKKTKDGELQLWDVILKELNLNISPGSSCH
CSEVGWFRVCFANMSENTLEIALKRIHEFMDRRRRF
GenBank annotation
19417..21056 T25K17.10
BLASTX cluster
19417..21077 cluster 4 108 hits for protein gene
BLASTN cluster
20294..21298 cluster 5 6 hits for EST
GENSCAN
17335..21053 gene model 4
Suboptimal exon
19373..19605 Intr Phase: 1 Score: 0.999
Grail
19396..19605 exon Phase: 0 Score: 88
Exon-Intron boundary candidatates
| Acceptor |
| 19373 [0.054] (1) |
19375 [0.001] (0) |
19396 [0.023] (0) |
19404 [0.001] (2) |
| 19490 [0.011] (1) |
19706 [1.00N/0.800] (1) |
19742 [0.019] (1) |
19745 [0.001] (1) |
| 19752 [0.008] (2) |
19755 [0.002] (2) |
19837 [0.009] (0) |
19865 [0.175] (1) |
| 20072 [0.040] (1) |
20091 [0.001] (2) |
20198 [1.00N/0.995] (1) |
20207 [0.145] (1) |
| 20216 [0.001] (1) |
20239 [0.005] (0) |
20258 [0.002] (1) |
20274 [0.081] (2) |
| 20446 [0.023] (0) |
20518 [0.001] (0) |
20558 [0.002] (1) |
20635 [0.014] (0) |
| 20642 [0.001] (1) |
20673 [0.003] (2) |
20732 [0.002] (1) |
20779 [0.001] (0) |
| 20794 [0.003] (0) |
20812 [0.001] (0) |
20907 [0.003] (2) |
20969 [0.001] (1) |
| 21018 [0.001] (2) |
| Donor |
| 19390 [0.003] (1) |
19395 [0.260] (0) |
19511 [0.007] (2) |
19573 [0.74N] (1) |
| 19605 [1.00N/0.999] (0) |
19625 [0.010] (2) |
19754 [0.027] (2) |
19989 [0.013] (0) |
| 20001 [1.00N/0.994] (0) |
20005 [0.007] (1) |
20378 [0.010] (2) |
20390 [0.222] (2) |
| 20417 [0.008] (2) |
20524 [0.055] (1) |
20758 [0.88N/0.133] (1) |
20954 [0.235] (2) |
| 20962 [0.009] (1) |
20969 [0.84N/0.201] (2) |
21049 [0.113] (1) |
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