information on F19B15    (24564..25795)

Direction: +

Frame: 3

ORF

    24543..25876  (Met: 24585 24597 25004 25070 25320 25593 25796 24804 24821 24844 24984 25091 25102 25149 25157 25276 25281 25307 25315 25329 25358 25411 25605 25658 25741 25746)
VLSVVGILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIG
IKPPKGVILYGEPGTGKTLLAKVCLCT*SNEY*FVCSIA*YYLTCQLHSVNRLFGQRPDL
CCAAGHLDFIRLNIARNLFSWIRIF*HLFLLMSSFLVSLCHKHEIVAIWWCYLMGISSLT
*LF*GCEFNISYFLESCW*S*QKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKR*
*YFHKPDL*H*MVI*TCCLKEQV*LTQEVNVRSKELCWNF*QLDGFDSRGDVKVILATNR
IESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQVIYNSTEMANQ*CSKLSCSLRLWVLFI
K*THIEDDSLGRCKPRRVCDDERRVLRS**AICTEAGLLALRERRMKVETLNHLVQAHTN
THTHTTWAITSH

GenBank annotation

    23976..25993    F19B15.70

BLASTX cluster

    23976..25822    cluster 3    91 hits for protein gene

BLASTN cluster

    23973..26138    cluster 6    6 hits for EST
    24541..24763    cluster 5    1 hits for EST

GENSCAN

    21922..25990    gene model 6

Grail

    24543..24806    exon    Phase: 0    Score: 90
    25355..25571    exon    Phase: 2    Score: 90

Exon-Intron boundary candidatates

Acceptor
24543 [0.95N/0.596] (0) 24571 [0.003] (1) 24577 [0.005] (1) 24643 [0.001] (1)
24652 [0.003] (1) 24657 [0.010] (0) 24663 [0.003] (0) 24715 [0.001] (1)
24837 [0.112] (0) 24842 [0.011] (2) 24877 [0.95N/0.115] (1) 24899 [0.045] (2)
24904 [0.002] (1) 25105 [0.96N/0.434] (1) 25127 [0.002] (2) 25152 [0.003] (0)
25165 [0.004] (1) 25209 [0.002] (0) 25247 [0.001] (2) 25350 [1.00N/0.014] (0)
25355 [1.00N/0.933] (2) 25372 [0.006] (1) 25452 [0.003] (0) 25472 [0.034] (2)
25520 [0.001] (2) 25572 [0.002] (0) 25661 [0.86N/0.343] (2) 25751 [0.002] (2)
25786 [0.002] (1) 25802 [0.001] (2) 25824 [0.001] (0)
Donor
24706 [0.009] (2) 24740 [0.004] (0) 24753 [0.005] (1) 24788 [1.00N/0.890] (0)
24921 [0.009] (1) 25191 [0.008] (1) 25264 [0.006] (2) 25274 [1.00N/0.890] (0)
25354 [0.036] (2) 25374 [0.004] (1) 25380 [0.035] (1) 25451 [0.004] (0)
25571 [1.00N/0.925] (0) 25793 [0.015] (0) 25801 [1.00N/0.138] (2)

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