information on F17N18
(5548..5688)
Direction: +
Frame: 1
ORF
4474..6825 (Met: 4525 4660 4687 4741 4783 4801 4912 5056 5071 5101 5347 5380 5419 5710 5914 6004 6151 6436 6472 6475 6658)
KLSLYLSLLLALFLGISMDSEVEENVISVITDTTFLISTNLKVDPRVISLFSQLFYDWRS
VYMEIKSLYPKMEFHLLLRQILKFWTSTDMGRQWKFVSLICKIMFLVSSMDLDSESELTS
LIKKIISLFNSKPDTGSELVSLITQLMRIDTSVDSDSEPTQESELLSLISQLVSAKPEPE
LTSLTRRIISTFISMNWEPMQFISVCPQVMVELVHGKLTTEVVRPRKAKERECELYAYEI
WKSTRQIHFHCILCNGENHEEYDKVPIEVKHPLHPRHSLQLAVRQWSEEETMIECYCCDE
YLMDYYYYCSSCDFAMNVSCLEKPPPVLSIDHPKWHQHPLILFPSQASFPCNLCALTHSS
CPFYICPPCDFVVHQKCLSLPHVIRISRHHHRISFTPSFEKGNWYCGICRKKMDNDYGGY
TCLKDGCSYVAHSRCATQKNVWDGLDLEGEPEEVEEEEVEPFVIISDGTIHHFSHPHHLR
MDKNTGRDYDENKQCQACITPIYFGNIYSCMQCNFILHEECANFSRKIHNPIHPHKLNLV
GGYDGVTKYYKDFCSVCPRMCTNGFFYECGKEECDRFKLHVQCATISEPLVHESHVHPLF
LTSKPRERRRCGVCKKKPLSHTETFNCIEGECTFALCFGCATLPHEVRYKHDKHMLTLSY
GEETSTMMYWCEACEKEINSEERFYKCDEYCCVTLHIQCLIGKELYLKPGSSFEYDHRHA
DVLLKTQVMSRPICFQCKSRCPHNTVIQWSELVYCTIHCFLFGRLRWDEEERRRKQAEID
NKDV
GenBank annotation
4525..6828 F17N18.20
BLASTX cluster
4756..6759 cluster 2 47 hits for protein gene
BLASTN cluster
None
GENSCAN
4525..6825 gene model 2
4525..6825 gene model 2
Suboptimal exon
4687..6825 Sngl Phase: 0 Score: 0.324
4741..6825 Sngl Phase: 0 Score: 0.140
Grail
4525..4611 exon Phase: 0 Score: 61
4687..5356 exon Phase: 0 Score: 84
5914..6725 exon Phase: 0 Score: 86
Exon-Intron boundary candidatates
Acceptor |
4537 [0.007] (0) |
4600 [0.012] (0) |
4797 [0.003] (2) |
4823 [0.004] (1) |
4886 [0.002] (1) |
4909 [0.010] (0) |
4946 [0.004] (1) |
4983 [0.034] (2) |
4991 [0.004] (1) |
5099 [0.001] (1) |
5135 [0.003] (1) |
5266 [0.001] (0) |
5276 [0.002] (1) |
5314 [0.002] (0) |
5430 [0.001] (2) |
5465 [0.034] (1) |
5512 [0.013] (0) |
5610 [0.007] (2) |
5746 [0.002] (0) |
5810 [0.003] (1) |
5934 [0.005] (2) |
6032 [0.001] (1) |
6140 [0.007] (1) |
6150 [0.004] (2) |
6208 [0.001] (0) |
6220 [0.005] (0) |
6362 [0.007] (1) |
6584 [0.001] (1) |
6598 [0.001] (0) |
6627 [0.002] (2) |
6655 [0.060] (0) |
6771 [0.94N/0.006] (2) |
Donor |
4599 [0.016] (0) |
4611 [1.00N/0.367] (0) |
4744 [0.032] (1) |
4757 [0.74N/0.013] (2) |
4774 [0.006] (1) |
4791 [0.011] (0) |
5170 [0.861] (1) |
5177 [0.270] (2) |
5255 [0.003] (2) |
5265 [0.015] (0) |
5277 [0.008] (0) |
5330 [0.016] (2) |
5356 [0.011] (1) |
5424 [0.017] (0) |
5506 [0.81N/0.009] (1) |
5684 [0.012] (2) |
5692 [0.005] (1) |
5756 [0.005] (2) |
5986 [0.89N/0.051] (1) |
6001 [0.017] (1) |
6116 [0.005] (2) |
6181 [0.011] (1) |
6361 [0.93N/0.789] (1) |
6411 [0.017] (0) |
6416 [0.009] (2) |
6601 [0.004] (1) |
6654 [0.90N/0.060] (0) |
6682 [1.00N/0.078] (1) |
6719 [0.009] (2) |
6725 [0.005] (2) |
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