BLASTX alignment cluster 24    (104062..105259)

Local alignments in this cluster

gi|3785984[fasta] (AC005560) putative reverse transcriptase [Arabidopsis thaliana]
Length 1449 aa
position (link: detail on the area) subject position direction score
105259..105038 (1187..1260) - 59
105029..104952 (1264..1289) - 106
104953..104729 (1290..1364) - 300
104720..104478 (1367..1447) - 259
104355..104119 (1352..1430) - 136

gi|3176712[fasta] (AC002392) putative zinc-finger protein [Arabidopsis thaliana]
Length 1447 aa
position (link: detail on the area) subject position direction score
105259..105032 (1185..1260) - 210
105104..104955 (1237..1286) - 119
104950..104726 (1289..1363) - 255
104720..104475 (1365..1446) - 239
104355..104119 (1350..1428) - 151

gi|3738337[fasta] (AC005170) putative reverse transcriptase [Arabidopsis thaliana]
Length 1216 aa
position (link: detail on the area) subject position direction score
105259..105092 (682..737) - 87
105032..104955 (759..784) - 102
104953..104729 (786..860) - 286
104690..104490 (873..939) - 189
104358..104116 (847..927) - 172

gi|4539462|emb|CAB39942.1|[fasta] (AL049500) putative protein [Arabidopsis thaliana]
Length 473 aa
position (link: detail on the area) subject position direction score
105259..105044 (210..281) - 165
105029..104955 (287..311) - 99
104950..104723 (314..389) - 261
104720..104487 (390..467) - 224
104358..104104 (374..458) - 114

gi|3461840[fasta] (AC005315) putative reverse transcriptase [Arabidopsis thaliana]
Length 1529 aa
position (link: detail on the area) subject position direction score
105259..105083 (1258..1316) - 207
105032..104955 (1335..1360) - 72
104953..104726 (1362..1437) - 243
104675..104475 (1454..1520) - 197
104358..104113 (1423..1504) - 146
3414..3304 (1469..1505) - 115

gi|4006833[fasta] (AC005970) putative reverse transcriptase [Arabidopsis thaliana]
Length 1352 aa
position (link: detail on the area) subject position direction score
105259..105029 (1108..1184) - 113
105029..104946 (1185..1212) - 72
104950..104726 (1212..1286) - 195
104693..104544 (1297..1346) - 129
104364..104134 (1270..1346) - 139

gi|3249073[fasta] (AC004473) Contains similarity to reverse transcriptase-like protein gb|2244803 from A. thaliana chromosome 4 contig gb|Z97336. [Arabidopsis thaliana]
Length 404 aa
position (link: detail on the area) subject position direction score
105259..105032 (201..276) - 228
105038..104952 (275..303) - 122
104953..104837 (304..342) - 144
104654..104472 (344..404) - 207

gi|3047086[fasta] (AF058914) similar to reverse transcriptase (Pfam: transcript_fact.hmm, score: 72.31) [Arabidopsis thaliana]
Length 928 aa
position (link: detail on the area) subject position direction score
104975..104955 (761..767) - 91
104953..104723 (769..845) - 258
104720..104472 (846..928) - 250
104358..104095 (830..917) - 131
3414..3295 (876..915) - 109
3316..3260 (909..927) - 41

gi|3004545[fasta] (AC003673) putative reverse transcriptase [Arabidopsis thaliana]
gi|4185148 (AC005724) putative reverse transcriptase [Arabidopsis thaliana]
Length 1412 aa
position (link: detail on the area) subject position direction score
105184..105104 (1168..1194) - 183
105032..104952 (1220..1246) - 78
104950..104729 (1248..1321) - 201
104675..104472 (1339..1406) - 186
104346..104122 (1312..1386) - 165
104121..104071 (1388..1404) - 49
3414..3295 (1354..1393) - 121
3298..3254 (1393..1407) - 44

gi|4544421|gb|AAD22330.1|AC006955_16[fasta] (AC006955) putative reverse transcriptase [Arabidopsis thaliana]
Length 631 aa
position (link: detail on the area) subject position direction score
105259..105029 (425..501) - 79
105029..104946 (502..529) - 74
104947..104882 (530..551) - 84
104675..104475 (562..628) - 198
104265..104062 (562..629) - 132

gi|4335746|gb|AAD17423|[fasta] (AC006284) hypothetical protein [Arabidopsis thaliana]
Length 166 aa
position (link: detail on the area) subject position direction score
105211..105047 (2..56) - 67
104696..104475 (90..163) - 242
104262..104119 (98..145) - 110

gi|4263828|gb|AAD15471|[fasta] (AC006067) putative reverse transcriptase [Arabidopsis thaliana]
Length 1277 aa
position (link: detail on the area) subject position direction score
105259..105077 (1103..1163) - 103
104675..104475 (1208..1274) - 189
104265..104116 (1208..1257) - 131
3414..3304 (1223..1259) - 116

gi|4335726|gb|AAD17404|[fasta] (AC006248) putative reverse transcriptase [Arabidopsis thaliana]
Length 90 aa
position (link: detail on the area) subject position direction score
104675..104475 (15..81) - 122
104274..104119 (12..63) - 147
3414..3295 (30..69) - 164
3304..3251 (67..84) - 41

gi|3193294[fasta] (AF069298) similar to reverse transcriptases (Pfam: rvt.hmm, score: 53.76) [Arabidopsis thaliana]
Length 657 aa
position (link: detail on the area) subject position direction score
105032..104952 (563..589) - 90
104944..104777 (593..648) - 130

gi|4538991|emb|CAB39612.1|[fasta] (AL049481) hypothetical protein [Arabidopsis thaliana]
Length 186 aa
position (link: detail on the area) subject position direction score
104663..104475 (124..186) - 86

gi|3184287[fasta] (AC004136) reverse-transcriptase-like protein [Arabidopsis thaliana]
Length 211 aa
position (link: detail on the area) subject position direction score
105014..104955 (30..49) - 101
104944..104753 (54..117) - 124
104699..104607 (134..164) - 65

gi|4512630|gb|AAD21699.1|[fasta] (AC004793) Contains reverse transcriptase domain (rvt) PF|00078. [Arabidopsis thaliana]
Length 1253 aa
position (link: detail on the area) subject position direction score
105029..104955 (904..928) - 85
104950..104768 (931..991) - 120
104678..104526 (1021..1071) - 55

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