HUGE |
Gene/Protein Characteristic Table for KIAA2000 |
Link to :
Rouge |
GTOP | SWISS-PROT/TrEMBL | GeneCards| RefDIC | |
Features : DNA sequence | Protein sequence | Expression | Mapping | |
Product ID : | ORK06179 |
---|---|
Accession No. : | AB082531 |
Description : | Nephrocystin-3. |
HUGO Gene Name : | nephronophthisis 3 (adolescent) (NPHP3) |
Clone Name : | bf00135 [Vector Info] |
Source : | Human adult brain |
Features of the cloned DNA sequence |
Description | |
---|---|---|
Length: 7784 bp
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cloned DNA seq. | |
Warning for N-terminal truncation: | NO |
Warning for coding interruption: | YES |
Length of 3'UTR 3704 bp Genome contig ID gi89161205r_133659676 PolyA signal sequence
(ATTAAA,-23) +----*----+----*----+----*----+----
TGAACATTAGGAATTAAAGGCTATATCTGGTCCTTFlanking genome sequence
(100000 - 99951) ----+----*----+----*----+----*----+----*----+----*
ACAATTTTGTAATTTGTTTCTCTGTCTGAGGAAAGCTGGCTGGATTGGTT
Chr f/r start end exon identity class ContigView(URL based/DAS) 3 r 133759676 133923993 45 99.7 Perfect prediction
Features of the protein sequence |
Description | |
---|---|---|
Length: 699 aa
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The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
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The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Search method | interpro_ID | From | To | Entry | Definition |
---|---|---|---|---|---|
FPrintScan | IPR002151 | 428 | 447 | PR00381 | Kinesin light chain |
IPR002151 | 450 | 468 | PR00381 | Kinesin light chain | |
IPR002151 | 515 | 532 | PR00381 | Kinesin light chain | |
IPR002151 | 559 | 579 | PR00381 | Kinesin light chain | |
IPR002151 | 594 | 615 | PR00381 | Kinesin light chain | |
HMMPfam | IPR001440 | 285 | 318 | PF00515 | Tetratricopeptide TPR_1 |
IPR001440 | 327 | 360 | PF00515 | Tetratricopeptide TPR_1 | |
IPR001440 | 369 | 402 | PF00515 | Tetratricopeptide TPR_1 | |
IPR001440 | 435 | 468 | PF00515 | Tetratricopeptide TPR_1 | |
IPR001440 | 477 | 510 | PF00515 | Tetratricopeptide TPR_1 | |
IPR001440 | 519 | 552 | PF00515 | Tetratricopeptide TPR_1 | |
IPR001440 | 561 | 594 | PF00515 | Tetratricopeptide TPR_1 | |
IPR013105 | 603 | 636 | PF07719 | Tetratricopeptide TPR_2 | |
HMMSmart | IPR013026 | 285 | 318 | SM00028 | Tetratricopeptide region |
IPR013026 | 327 | 360 | SM00028 | Tetratricopeptide region | |
IPR013026 | 369 | 402 | SM00028 | Tetratricopeptide region | |
IPR013026 | 435 | 468 | SM00028 | Tetratricopeptide region | |
IPR013026 | 477 | 510 | SM00028 | Tetratricopeptide region | |
IPR013026 | 519 | 552 | SM00028 | Tetratricopeptide region | |
IPR013026 | 561 | 594 | SM00028 | Tetratricopeptide region | |
IPR013026 | 603 | 636 | SM00028 | Tetratricopeptide region | |
ProfileScan | IPR013026 | 285 | 318 | PS50005 | Tetratricopeptide region |
IPR013026 | 285 | 636 | PS50293 | Tetratricopeptide region | |
IPR013026 | 327 | 360 | PS50005 | Tetratricopeptide region | |
IPR013026 | 369 | 402 | PS50005 | Tetratricopeptide region | |
IPR013026 | 435 | 468 | PS50005 | Tetratricopeptide region | |
IPR013026 | 477 | 510 | PS50005 | Tetratricopeptide region | |
IPR013026 | 519 | 552 | PS50005 | Tetratricopeptide region | |
IPR013026 | 561 | 594 | PS50005 | Tetratricopeptide region | |
IPR013026 | 603 | 636 | PS50005 | Tetratricopeptide region |
Method | No. | N terminal | transmembrane region | C terminal | type | length |
---|---|---|---|---|---|---|
- | - | - | - | - | - | - |
Expression profile |
Description | |
---|---|---|
RT-PCR-ELISA | Description |
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Experimental conditions
: CTAAACAAGACCAGCAAAGCC | |
: CTGCCCAAATCCTTAGTCTCC | |
: 95 °C |
RH mapping information |
Description | |
---|---|---|
: 3 |
: genbank | |
: - | |
: - | |
: - | |
: - |
How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage ![]() | |