HUGE

Gene/Protein Characteristic Table for KIAA1924

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK07360
Accession No. :	AB067511
Description :	WD repeat domain 90.
HUGO Gene Name :	WD repeat domain 90 (WDR90)
Clone Name :	hh01339 [Vector Info]
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 5499 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
YES

Integrity of 3' end

Length of 3'UTR 3575 bp

Genome contig ID gi51511732f_539312
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
CCGGACACAGGCTTCTTTGCCTACACGTGCGGCCG
Flanking genome sequence
(111766 - 111815)
----+----*----+----*----+----*----+----*----+----*
CCTGGTGGTGGTGGAGGACCTGCACTCTGGCGCCCAGCAGCACTGGTCCG

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 16 f 639312 651076 26 99.7 Perfect prediction

Features of the protein sequence	Description

Length: 613 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
EAW85774	1.7e-205	100.0	hCG1985539, iso...	Homo sapiens
EAW85771	1.7e-201	98.7	hCG1985539, iso...	Homo sapiens
EAW85772	1.8e-201	98.7	hCG1985539, iso...	Homo sapiens
EAW85770	2e-200	98.5	hCG1985539, iso...	Homo sapiens
BAC03575	1.6e-163	99.8	unnamed protein...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

None - - - - -

Search method	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 502 GAAVVYPCHAVIVVLLVDTGEQR 524 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	502	GAAVVYPCHAVIVVLLVDTGEQR	524	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: TACCTGTATGTGCTCTTTCGG

Primer_r
: CGTGGCCGTAGACTTAAACTC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 16

Experimental conditions

Panel name	: genbank
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	YES

Length of 3'UTR	3575 bp
Genome contig ID	gi51511732f_539312
PolyA signal sequence (None)	+--------+--------+----*----+---- CCGGACACAGGCTTCTTTGCCTACACGTGCGGCCG
Flanking genome sequence (111766 - 111815)	----+--------+--------+--------+--------+----* CCTGGTGGTGGTGGAGGACCTGCACTCTGGCGCCCAGCAGCACTGGTCCG

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	16	f	639312	651076	26	99.7	Perfect prediction

Primer_f	: TACCTGTATGTGCTCTTTCGG
Primer_r	: CGTGGCCGTAGACTTAAACTC
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1924

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information