HUGE

Gene/Protein Characteristic Table for KIAA1908

Link to : GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK07538
Accession No. :	AB067495
Description :
HUGO Gene Name :
Clone Name :	ah02604 [Vector Info]
Source :	Human brain (amygdala)

Features of the cloned DNA sequence	Description

Length: 5676 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 1352 bp

Genome contig ID gi89161213f_1476257
PolyA signal sequence
(AATAAA,-21)
+----*----+----*----+----*----+----
TTTTCATCATCTGCAATAAAAACTCTGTATGCATT
Flanking genome sequence
(119530 - 119579)
----+----*----+----*----+----*----+----*----+----*
AAACCATAACTCTCCATCCTTCTGCCCCTCTTGCCGCTGGTACCCACCAT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 7 f 1576257 1595785 4 99.1 Perfect prediction

Features of the protein sequence	Description

Length: 445 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
BAC03573	3.6e-88	100.0	unnamed protein...	Homo sapiens
BAC03830	1.3e-56	100.0	unnamed protein...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues

Result of motif / domain search (InterProScan and SOSUI)

Motif_DB interpro_ID From To Entry Definition

None - - - - -

Motif_DB	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

- - - - - - -

Method	No.	N terminal	transmembrane region	C terminal	type	length
-	-	-	-	-	-	-

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: AGATTCTGAAGCTTGGCGGAG

Primer_r
: TATCCGAGTTCCTGCCATTAC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 7

Experimental conditions

Panel name	: genbank
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	1352 bp
Genome contig ID	gi89161213f_1476257
PolyA signal sequence (AATAAA,-21)	+--------+--------+----*----+---- TTTTCATCATCTGCAATAAAAACTCTGTATGCATT
Flanking genome sequence (119530 - 119579)	----+--------+--------+--------+--------+----* AAACCATAACTCTCCATCCTTCTGCCCCTCTTGCCGCTGGTACCCACCAT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	7	f	1576257	1595785	4	99.1	Perfect prediction

Primer_f	: AGATTCTGAAGCTTGGCGGAG
Primer_r	: TATCCGAGTTCCTGCCATTAC
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1908

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information