HUGE

Gene/Protein Characteristic Table for KIAA1889

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK07376
Accession No. :	AB067476
Description :	XK-related protein 4.
HUGO Gene Name :	XK, Kell blood group complex subunit-related family, member 4 (XKR4)
Clone Name :	fk02634 [Vector Info]
Source :	Human fetal brain

Features of the cloned DNA sequence	Description

Length: 3441 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 1922 bp

Genome contig ID gi51511724f_56078037
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
ACCCAACTGATAGATTAAGTATTAGTCAAACCACT
Flanking genome sequence
(523227 - 523276)
----+----*----+----*----+----*----+----*----+----*
AAAAAAGAAAAAGAAAAAAGTTTAACTTAATTATTCGGTTATTTGGATCT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 8 f 56178037 56601262 3 100.0 Perfect prediction

Features of the protein sequence	Description

Length: 505 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
Q5GH76	1.9e-201	100.0	XK-related prot...	Homo sapiens
Q49LS4	8e-201	99.6	XK-related prot...	Pan troglodytes
XP_851429	9e-196	97.0	similar to XK-r...	Canis lupus fam...
Q5GH59	8.1e-194	95.8	XK-related prot...	Rattus norvegicus
Q5GH67	2.9e-193	95.8	XK-related prot...	Mus musculus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

None - - - - -

Search method	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 1 GLTLFFVVLGSLSVQVFSFRWFV 23 SECONDARY 23

2 180 IVQTHSLQALQGFTAAASLVSLA 202 SECONDARY 23

3 223 SYMAVIIQFCWHFFTIAARVITF 245 PRIMARY 23

4 252 FQLYFGIFIVLHWCIMTFWIVHC 274 PRIMARY 23

5 283 WEEIVFDMVVGIIYIFSWFNVK 304 PRIMARY 22

6 311 RLFIYYFVILLENTALSALWYLY 333 PRIMARY 23

7 342 FAIPALCVVFSSFLTGVVFMLMY 364 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	1	GLTLFFVVLGSLSVQVFSFRWFV	23	SECONDARY	23
2	180	IVQTHSLQALQGFTAAASLVSLA	202	SECONDARY	23
3	223	SYMAVIIQFCWHFFTIAARVITF	245	PRIMARY	23
4	252	FQLYFGIFIVLHWCIMTFWIVHC	274	PRIMARY	23
5	283	WEEIVFDMVVGIIYIFSWFNVK	304	PRIMARY	22
6	311	RLFIYYFVILLENTALSALWYLY	333	PRIMARY	23
7	342	FAIPALCVVFSSFLTGVVFMLMY	364	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: CCATGTGTGAAAATCCTATCC

Primer_r
: TCTGTCAAAAAGGATGTTCGC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 8

Experimental conditions

Panel name	: genbank
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	1922 bp
Genome contig ID	gi51511724f_56078037
PolyA signal sequence (None)	+--------+--------+----*----+---- ACCCAACTGATAGATTAAGTATTAGTCAAACCACT
Flanking genome sequence (523227 - 523276)	----+--------+--------+--------+--------+----* AAAAAAGAAAAAGAAAAAAGTTTAACTTAATTATTCGGTTATTTGGATCT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	8	f	56178037	56601262	3	100.0	Perfect prediction

Primer_f	: CCATGTGTGAAAATCCTATCC
Primer_r	: TCTGTCAAAAAGGATGTTCGC
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1889

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information