HUGE

Gene/Protein Characteristic Table for KIAA1877

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK07003
Accession No. :	AB058780
Description :	ST6 beta-galactosamide alpha-2,6-sialyltranferase 2.
HUGO Gene Name :	ST6 beta-galactosamide alpha-2,6-sialyltranferase 2 (ST6GAL2)
Clone Name :	pg00264 [Vector Info]
Source :	Human brain (hippocampus)

Features of the cloned DNA sequence	Description

Length: 6782 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
YES

Integrity of 3' end

Length of 3'UTR 5073 bp

Genome contig ID gi89161199r_106684492
PolyA signal sequence
(AATAAA,-24)
+----*----+----*----+----*----+----
TTTTTCTTGTAAATAAAACATGTTTTCATTTGTCT
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AGAAGTTTCTTGTTTTAATTCGTAGAAGTTACACATACAAATGAGCAAGT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 2 r 106784492 106869042 6 99.1 Perfect prediction

Features of the protein sequence	Description

Length: 534 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
Q96JF0	0	100.0	Beta-galactosid...	Homo sapiens
XP_515705	0	99.2	beta-galactosid...	Pan troglodytes
Q701R4	0	98.9	Beta-galactosid...	Pan troglodytes
XP_001109602	0	97.2	similar to beta...	Macaca mulatta
NP_001135824	2.1e-188	98.2	ST6 beta-galact...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR001675 243 511 PF00777 Glycosyl transferase

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR001675	243	511	PF00777	Glycosyl transferase

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 16 RMLFGIFAWGLLFLLIFIYFTDS 38 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	16	RMLFGIFAWGLLFLLIFIYFTDS	38	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: ATGAGTGCCAGTATGTGATTG

Primer_r
: TCTGATAATTCCCCTGGTCCC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 2

Experimental conditions

Panel name	: CCR
Primer_f	: ATGAGTGCCAGTATGTGATTG
Primer_r	: TCTGATAATTCCCCTGGTCCC
PCR product length	: 95 bp
PCR conditions	: 15 °C62 sec60 °C30 sec178 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	YES

Length of 3'UTR	5073 bp
Genome contig ID	gi89161199r_106684492
PolyA signal sequence (AATAAA,-24)	+--------+--------+----*----+---- TTTTTCTTGTAAATAAAACATGTTTTCATTTGTCT
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* AGAAGTTTCTTGTTTTAATTCGTAGAAGTTACACATACAAATGAGCAAGT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	2	r	106784492	106869042	6	99.1	Perfect prediction

Gene/Protein Characteristic Table for KIAA1877

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information