HUGE

Gene/Protein Characteristic Table for KIAA1865

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK04852
Accession No. :	AB058768
Description :	RING finger protein C14orf4.
HUGO Gene Name :
Clone Name :	fj14303 [Vector Info]
Source :	Human fetal brain

Features of the cloned DNA sequence	Description

Length: 3641 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
YES

Integrity of 3' end

Length of 3'UTR 848 bp

Genome contig ID gi51511730r_76460641
PolyA signal sequence
(AATAAA,-19)
+----*----+----*----+----*----+----
GAGCTTAGTAACTTGTAATAAATTCAATTGATATT
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AACTGCGCTGAGTCAGCAATTTTGTCTTTCTAGGGCTAAGGCCATGCAAC

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 14 r 76560641 76564375 2 99.0 Perfect prediction

Features of the protein sequence	Description

Length: 723 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
Q9H1B7	3.7e-183	99.7	Enhanced at pub...	Homo sapiens
Q2MJS2	9.3e-183	99.3	Enhanced at pub...	Macaca mulatta
XP_510088	3.4e-182	99.9	chromosome 14 o...	Pan troglodytes
XP_001928351	1.5e-179	98.0	similar to poly...	Sus scrofa
Q5EIC4	3.2e-177	96.8	Enhanced at pub...	Rattus norvegicus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues

Result of motif / domain search (InterProScan and SOSUI)

Motif_DB interpro_ID From To Entry Definition

None - - - - -

Motif_DB	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

- - - - - - -

Method	No.	N terminal	transmembrane region	C terminal	type	length
-	-	-	-	-	-	-

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: AGTGCACCCCCAAAACATTCC

Primer_r
: GGGCCTTGATACTCTCTCTAG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 14

Experimental conditions

Panel name	: genbank
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	YES

Length of 3'UTR	848 bp
Genome contig ID	gi51511730r_76460641
PolyA signal sequence (AATAAA,-19)	+--------+--------+----*----+---- GAGCTTAGTAACTTGTAATAAATTCAATTGATATT
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* AACTGCGCTGAGTCAGCAATTTTGTCTTTCTAGGGCTAAGGCCATGCAAC

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	14	r	76560641	76564375	2	99.0	Perfect prediction

Primer_f	: AGTGCACCCCCAAAACATTCC
Primer_r	: GGGCCTTGATACTCTCTCTAG
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1865

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information