HUGE

Gene/Protein Characteristic Table for KIAA1837

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK05591
Accession No. :	AB058740
Description :	polycystic kidney disease 1-like isoform b.
HUGO Gene Name :	KIAA0319-like (KIAA0319L)
Clone Name :	fh22040s1 [Vector Info]
Source :	Human fetal brain
Note :	We replaced fh22040, former representative clones for KIAA1837 with fh22040s1. (2002/5/10)

Features of the cloned DNA sequence	Description

Length: 4423 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO
Ensembl ContigView (Add our DAS server as a DAS source)
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Features of the protein sequence	Description

Length: 639 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
BAB14874	100.0	unnamed protein...	Homo sapiens
CAD38985	100.0	hypothetical pr...	Homo sapiens
AAL55781	100.0	unknown [Homo s...	Homo sapiens
XP_513307	100.0	polycystic kidn...	Pan troglodytes
AAN61054	100.0	polycystic kidn...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB002317	8.8e-133	62.0	KIAA0319

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR000601 254 328 PF00801 PKD

IPR000601 340 425 PF00801 PKD

HMMSmart IPR000601 52 141 SM00089 PKD

IPR000601 147 237 SM00089 PKD

IPR000601 243 331 SM00089 PKD

IPR000601 337 428 SM00089 PKD

ProfileScan IPR000601 166 235 PS50093 PKD

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR000601	254	328	PF00801	PKD
IPR000601	340	425	PF00801	PKD
HMMSmart	IPR000601	52	141	SM00089	PKD
IPR000601	147	237	SM00089	PKD
IPR000601	243	331	SM00089	PKD
IPR000601	337	428	SM00089	PKD
ProfileScan	IPR000601	166	235	PS50093	PKD

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 574 LYVIIATFVIVVALGILSWTVIC 596 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	574	LYVIIATFVIVVALGILSWTVIC	596	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: TGGAGAATTTCATCAAGGTGC

Primer_r
: TACAACAACAGATCACAGTCC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 1

Experimental conditions

Panel name	: CCR
Primer_f	: TGGAGAATTTCATCAAGGTGC
Primer_r	: TACAACAACAGATCACAGTCC
PCR product length	: 95 bp
PCR conditions	: 15 °C62 sec60 °C30 sec135(700) cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Gene/Protein Characteristic Table for KIAA1837

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information