HUGE

Gene/Protein Characteristic Table for KIAA1767

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK07103
Accession No. :	AB051554
Description :	thyroid adenoma associated.
HUGO Gene Name :	thyroid adenoma associated (THADA)
Clone Name :	eg01735 [Vector Info]
Source :
Note :	We replaced fj17894, former representative clones for KIAA1767 with eg01735. (2005/08/06)

Features of the cloned DNA sequence	Description

Length: 6310 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 96 bp

Genome contig ID gi89161199r_43211495
PolyA signal sequence
(CATAAA,-23)
+----*----+----*----+----*----+----
AAACATGTTGAACATAAATTCAAAAATTTTATCCC
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
ATTCATGCCTCCCCTACTTCTGTGAGTCCAGTCGTCTGTCACTCCTTACA

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 2 r 43311495 43676617 38 99.8 Perfect prediction

Features of the protein sequence	Description

Length: 1960 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
BAF82712	100.0	unnamed protein...	Homo sapiens
Q6YHU6	99.9	Thyroid adenoma...	Homo sapiens
XP_001141732	99.1	thyroid adenoma...	Pan troglodytes
A8C752	95.8	Thyroid adenoma...	Chlorocebus aet...
XP_001499013	84.0	similar to thyr...	Equus caballus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

ScanRegExp IPR000292 1500 1509 PS01005 Formate/nitrite transporter

Search method	interpro_ID	From	To	Entry	Definition
ScanRegExp	IPR000292	1500	1509	PS01005	Formate/nitrite transporter

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 1776 FCQVDASIALALALAVLCDLLQQ 1798 PRIMARY 23

2 1843 FWAETLIFVKYLCKHLFCLLSKS 1865 SECONDARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	1776	FCQVDASIALALALAVLCDLLQQ	1798	PRIMARY	23
2	1843	FWAETLIFVKYLCKHLFCLLSKS	1865	SECONDARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: CCCATCCTATTCTTGAGTTGC

Primer_r
: TGGCAGGTATTTTCTTGTGAC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 2

Experimental conditions

Panel name	: unigene
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	96 bp
Genome contig ID	gi89161199r_43211495
PolyA signal sequence (CATAAA,-23)	+--------+--------+----*----+---- AAACATGTTGAACATAAATTCAAAAATTTTATCCC
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* ATTCATGCCTCCCCTACTTCTGTGAGTCCAGTCGTCTGTCACTCCTTACA

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	2	r	43311495	43676617	38	99.8	Perfect prediction

Primer_f	: CCCATCCTATTCTTGAGTTGC
Primer_r	: TGGCAGGTATTTTCTTGTGAC
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1767

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information