HUGE

Gene/Protein Characteristic Table for KIAA1742

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK04779
Accession No. :	AB051529
Description :	dispatched B.
HUGO Gene Name :	dispatched homolog 2 (Drosophila) (DISP2)
Clone Name :	pj01304s1 [Vector Info]
Source :	Human brain (hippocampus)
Note :	We replaced pj01304, former representative clones for KIAA1742 with pj01304s1. (2002/5/10)

Features of the cloned DNA sequence	Description

Length: 5035 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
YES

Integrity of 3' end

Length of 3'UTR 737 bp

Genome contig ID gi51511731f_38337773
PolyA signal sequence
(AATAAA,-31)
+----*----+----*----+----*----+----
TGTTAATAAACAGTAATAATCCTTTCCATCTCTGC
Flanking genome sequence
(112777 - 112826)
----+----*----+----*----+----*----+----*----+----*
ACATTTTAGTCTCCTTGGAATCTATCTCACTACTTCACTACAGGGTAGCC

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 15 f 38437726 38450548 8 98.9 Perfect prediction

Features of the protein sequence	Description

Length: 1301 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
A7MBM2	100.0	Protein dispatc...	Homo sapiens
EAW92408	100.0	dispatched homo...	Homo sapiens
XP_523050	99.5	dispatched B [P...	Pan troglodytes
XP_544618	89.8	similar to disp...	Canis lupus fam...
XP_001501244	89.6	dispatched homo...	Equus caballus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

ProfileScan IPR000731 407 543 PS50156 Sterol-sensing 5TM box

Search method	interpro_ID	From	To	Entry	Definition
ProfileScan	IPR000731	407	543	PS50156	Sterol-sensing 5TM box

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 71 AVLMLCLAVIFLCTLAGLLGARL 93 PRIMARY 23

2 391 YPLLALVAIFFGMALYLRSLFLT 413 PRIMARY 23

3 418 LGVLGSLLVAFFLYQVAFRMAYF 440 PRIMARY 23

4 445 LAALLLLSSVCANHTLIFFDLWR 467 PRIMARY 23

5 485 TMHHFGYLLLVSGLTTSAAFYAS 507 SECONDARY 23

6 520 LFMGTAVLVHLALTLVWLPASAV 542 PRIMARY 23

7 860 LSTEPAVVLGLALALAFATLLLG 882 PRIMARY 23

8 886 VPLSLFSVAAVAGTVLLTVGLLV 908 PRIMARY 23

9 916 TAEALFLSASVGLSVDFTVNYCI 938 SECONDARY 23

10 961 CATAVGAAALFAAGVLMLPATVL 983 PRIMARY 23

11 992 LMMVKCVSCGFASFFFQSLCCFF 1014 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	71	AVLMLCLAVIFLCTLAGLLGARL	93	PRIMARY	23
2	391	YPLLALVAIFFGMALYLRSLFLT	413	PRIMARY	23
3	418	LGVLGSLLVAFFLYQVAFRMAYF	440	PRIMARY	23
4	445	LAALLLLSSVCANHTLIFFDLWR	467	PRIMARY	23
5	485	TMHHFGYLLLVSGLTTSAAFYAS	507	SECONDARY	23
6	520	LFMGTAVLVHLALTLVWLPASAV	542	PRIMARY	23
7	860	LSTEPAVVLGLALALAFATLLLG	882	PRIMARY	23
8	886	VPLSLFSVAAVAGTVLLTVGLLV	908	PRIMARY	23
9	916	TAEALFLSASVGLSVDFTVNYCI	938	SECONDARY	23
10	961	CATAVGAAALFAAGVLMLPATVL	983	PRIMARY	23
11	992	LMMVKCVSCGFASFFFQSLCCFF	1014	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: TACTGCATCTCCTATCACCTG

Primer_r
: AAGAAACAGCAGAGAGATTGG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 15

Experimental conditions

Panel name	: unigene
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	YES

Length of 3'UTR	737 bp
Genome contig ID	gi51511731f_38337773
PolyA signal sequence (AATAAA,-31)	+--------+--------+----*----+---- TGTTAATAAACAGTAATAATCCTTTCCATCTCTGC
Flanking genome sequence (112777 - 112826)	----+--------+--------+--------+--------+----* ACATTTTAGTCTCCTTGGAATCTATCTCACTACTTCACTACAGGGTAGCC

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	15	f	38437726	38450548	8	98.9	Perfect prediction

Primer_f	: TACTGCATCTCCTATCACCTG
Primer_r	: AAGAAACAGCAGAGAGATTGG
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1742

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information