HUGE

Gene/Protein Characteristic Table for KIAA1602

Link to : GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK05679
Accession No. :	AB046822
Description :
HUGO Gene Name :
Clone Name :	fj10252 [Vector Info]
Source :	Human fetal brain

Features of the cloned DNA sequence	Description

Length: 4235 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
YES

Integrity of 3' end

Length of 3'UTR 1222 bp

Genome contig ID gi89161190r_48371196
PolyA signal sequence
(AATAAA,-26)
+----*----+----*----+----*----+----
CGTATCCCTAATAAAATGTGGAGGCCCCCTCCCTG
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
CCCCTGAGTCGGCTTGTTGTGTGGGAGGACTCAGGCAGGCCAGGTCGGGG

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 12 r 48471196 48477052 5 100.0 Perfect prediction

Features of the protein sequence	Description

Length: 1003 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
NP_001032895	98.9	hypothetical pr...	Homo sapiens
XP_001915643	90.1	hypothetical pr...	Equus caballus
XP_001926825	90.1	hypothetical pr...	Sus scrofa
XP_543680	89.9	hypothetical pr...	Canis lupus fam...
EAW58094	99.9	hCG1640179, iso...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues

Result of motif / domain search (InterProScan and SOSUI)

Motif_DB interpro_ID From To Entry Definition

None - - - - -

Motif_DB	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

- - - - - - -

Method	No.	N terminal	transmembrane region	C terminal	type	length
-	-	-	-	-	-	-

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: CTCCCCTTCCTTAGCATGTTC

Primer_r
: AAACTTGAGACCCCTAGCTGG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 12

Experimental conditions

Panel name	: RH-map
Primer_f	: CTCCCCTTCCTTAGCATGTTC
Primer_r	: AAACTTGAGACCCCTAGCTGG
PCR product length	: 168 bp
PCR conditions	: 95 °C15 sec66 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	YES

Length of 3'UTR	1222 bp
Genome contig ID	gi89161190r_48371196
PolyA signal sequence (AATAAA,-26)	+--------+--------+----*----+---- CGTATCCCTAATAAAATGTGGAGGCCCCCTCCCTG
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* CCCCTGAGTCGGCTTGTTGTGTGGGAGGACTCAGGCAGGCCAGGTCGGGG

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	12	r	48471196	48477052	5	100.0	Perfect prediction

Gene/Protein Characteristic Table for KIAA1602

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information