HUGE

Gene/Protein Characteristic Table for KIAA1573

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK04412
Accession No. :	AB046793
Description :	cache domain containing 1.
HUGO Gene Name :	cache domain containing 1 (CACHD1)
Clone Name :	fh23868 [Vector Info]
Source :	Human fetal brain

Features of the cloned DNA sequence	Description

Length: 5050 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 1491 bp

Genome contig ID gi89161185f_64720440
PolyA signal sequence
(AATAAA,-19)
+----*----+----*----+----*----+----
AATTGCAATCTAGTGAAATAAACTGTATGCAATGG
Flanking genome sequence
(210885 - 210934)
----+----*----+----*----+----*----+----*----+----*
ACCATTTTAGTGGCTACAGTGATTTGTTAATGTACCACTCCTTGTGCCTC

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 1 f 64820432 64931323 25 99.6 Perfect prediction

Features of the protein sequence	Description

Length: 1185 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
EAX06551	100.0	cache domain co...	Homo sapiens
CAH70309	99.9	cache domain co...	Homo sapiens
Q5VU97	99.9	VWFA and cache ...	Homo sapiens
XP_001089910	99.6	similar to von ...	Macaca mulatta
XP_536680	98.9	similar to von ...	Canis lupus fam...

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR013608 1 115 PF08399 VWA N-terminal

IPR002035 139 334 PF00092 von Willebrand factor

IPR004010 364 443 PF02743 Cache

IPR004010 683 764 PF02743 Cache

ProfileScan IPR002035 139 354 PS50234 von Willebrand factor

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR013608	1	115	PF08399	VWA N-terminal
IPR002035	139	334	PF00092	von Willebrand factor
IPR004010	364	443	PF02743	Cache
IPR004010	683	764	PF02743	Cache
ProfileScan	IPR002035	139	354	PS50234	von Willebrand factor

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 1007 VGPVAGGIMGCIMVLVLAVYAYR 1029 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	1007	VGPVAGGIMGCIMVLVLAVYAYR	1029	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: TGCCCCACTCCACAAAATAGG

Primer_r
: ACCTCTTAAATTCCTCTGCCC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 1

Experimental conditions

Panel name	: CCR
Primer_f	: TGCCCCACTCCACAAAATAGG
Primer_r	: ACCTCTTAAATTCCTCTGCCC
PCR product length	: 146 bp
PCR conditions	: 95 °C15 sec64 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	1491 bp
Genome contig ID	gi89161185f_64720440
PolyA signal sequence (AATAAA,-19)	+--------+--------+----*----+---- AATTGCAATCTAGTGAAATAAACTGTATGCAATGG
Flanking genome sequence (210885 - 210934)	----+--------+--------+--------+--------+----* ACCATTTTAGTGGCTACAGTGATTTGTTAATGTACCACTCCTTGTGCCTC

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	1	f	64820432	64931323	25	99.6	Perfect prediction

Gene/Protein Characteristic Table for KIAA1573

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information