HUGE

Gene/Protein Characteristic Table for KIAA1403

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK06679
Accession No. :	AB037824
Description :	RNA polymerase II-associated protein 1.
HUGO Gene Name :	RNA polymerase II associated protein 1 (RPAP1)
Clone Name :	fg02666s1 [Vector Info]
Source :	Human fetal brain
Note :	We replaced fg02666, former representative clones for KIAA1403 with fg02666s1. (2002/5/10)

Features of the cloned DNA sequence	Description

Length: 5897 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 1846 bp

Genome contig ID gi51511731r_39496669
PolyA signal sequence
(AATAAA,-23)
+----*----+----*----+----*----+----
GTTGTGCATTAAAATAAATGTTTTTTATCTCCTGG
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AAATTTGATCTGGACTGATTTCAGCCATGTTAGTTCAGGGTTAGTATCTG

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 15 r 39596669 39623735 24 99.4 Perfect prediction

Features of the protein sequence	Description

Length: 1337 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
EAW92503	99.9	RNA polymerase ...	Homo sapiens
Q9BWH6	99.9	RNA polymerase ...	Homo sapiens
EAW92504	99.8	RNA polymerase ...	Homo sapiens
NP_056355	99.8	RNA polymerase ...	Homo sapiens
XP_510325	99.3	RNA polymerase ...	Pan troglodytes

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR013930 246 294 PF08621 RNA polymerase II-associated protein 1

IPR013929 376 447 PF08620 RNA polymerase II-associated protein 1

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR013930	246	294	PF08621	RNA polymerase II-associated protein 1
IPR013929	376	447	PF08620	RNA polymerase II-associated protein 1

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 698 RLWAVAASYGQGGYLYRELYPVL 720 SECONDARY 23

2 743 RIASLLTLLTQLTLAAGSTPAET 765 SECONDARY 23

3 772 ASLSATPSLVTWTQVSGLQPLVE 794 SECONDARY 23

4 805 SRPEMWRAVGPVPVACLLFLGA 826 PRIMARY 22

5 916 LTALLSLLNTLAQIHKGLCGQLA 938 SECONDARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	698	RLWAVAASYGQGGYLYRELYPVL	720	SECONDARY	23
2	743	RIASLLTLLTQLTLAAGSTPAET	765	SECONDARY	23
3	772	ASLSATPSLVTWTQVSGLQPLVE	794	SECONDARY	23
4	805	SRPEMWRAVGPVPVACLLFLGA	826	PRIMARY	22
5	916	LTALLSLLNTLAQIHKGLCGQLA	938	SECONDARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: GATGGAAAGATGGGTACGTTG

Primer_r
: ATGTAATGGTAGGGCTCACTG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 15

Experimental conditions

Panel name	: unigene
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	1846 bp
Genome contig ID	gi51511731r_39496669
PolyA signal sequence (AATAAA,-23)	+--------+--------+----*----+---- GTTGTGCATTAAAATAAATGTTTTTTATCTCCTGG
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* AAATTTGATCTGGACTGATTTCAGCCATGTTAGTTCAGGGTTAGTATCTG

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	15	r	39596669	39623735	24	99.4	Perfect prediction

Primer_f	: GATGGAAAGATGGGTACGTTG
Primer_r	: ATGTAATGGTAGGGCTCACTG
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1403

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information