HUGE

Gene/Protein Characteristic Table for KIAA1307

Link to : GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK07275
Accession No. :	AB037728
Description :	Zinc finger UBR1-type protein 1.
HUGO Gene Name :	ubiquitin protein ligase E3 component n-recognin 4 (UBR4)
Clone Name :	fh08302 [Vector Info]
Source :	Human fetal brain

Features of the cloned DNA sequence	Description

Length: 5601 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 564 bp

Genome contig ID gi89161185r_19250005
PolyA signal sequence
(ATTAAA,-24)
+----*----+----*----+----*----+----
ATATATACACGATTAAAGTGCTGCAAATATCTCAG
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AAGATAAAGTTTCTCTATGTCTATAAAATTGACGTGATTTACTTCTTTGC

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 1 r 19350005 19378151 31 100.0 Perfect prediction

Features of the protein sequence	Description

Length: 1678 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
CAI19269	100.0	ubiquitin prote...	Homo sapiens
EAW94868	100.0	zinc finger, UB...	Homo sapiens
Q5T4S7	99.0	E3 ubiquitin-pr...	Homo sapiens
AAL83880	99.0	p600 [Homo sapi...	Homo sapiens
XP_513158	98.8	retinoblastoma-...	Pan troglodytes

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB020703	3.2e-06	25.3	KIAA0896

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR003126 882 950 PF02207 Zinc finger

HMMSmart IPR013993 882 950 SM00396 Zinc finger

ProfileScan IPR003126 878 951 PS51157 Zinc finger

ScanRegExp IPR007087 880 902 PS00028 Zinc finger

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR003126	882	950	PF02207	Zinc finger
HMMSmart	IPR013993	882	950	SM00396	Zinc finger
ProfileScan	IPR003126	878	951	PS51157	Zinc finger
ScanRegExp	IPR007087	880	902	PS00028	Zinc finger

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 69 QMRFVPLILARLLLIFDYLLHQY 91 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	69	QMRFVPLILARLLLIFDYLLHQY	91	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: TGGGACTCAAGCAATAGAACG

Primer_r
: AGGGGAAGTCAAACCAGCGTG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 1

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: TGGGACTCAAGCAATAGAACG
Primer_r	: AGGGGAAGTCAAACCAGCGTG
PCR product length	: 98 bp
PCR conditions	: 95 °C15 sec64 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	564 bp
Genome contig ID	gi89161185r_19250005
PolyA signal sequence (ATTAAA,-24)	+--------+--------+----*----+---- ATATATACACGATTAAAGTGCTGCAAATATCTCAG
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* AAGATAAAGTTTCTCTATGTCTATAAAATTGACGTGATTTACTTCTTTGC

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	1	r	19350005	19378151	31	100.0	Perfect prediction

Gene/Protein Characteristic Table for KIAA1307

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information