HUGE

Gene/Protein Characteristic Table for KIAA1174

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK05843
Accession No. :	AB033000
Description :	Protein LMBR1L.
HUGO Gene Name :	limb region 1 homolog (mouse)-like (LMBR1L)
Clone Name :	hh05825a [Vector Info]
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 2800 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 1506 bp

Genome contig ID gi89161190r_47677208
PolyA signal sequence
(AATAAA,-19)
+----*----+----*----+----*----+----
GGCTTCAGCCATCAGCAATAAAGTTGATCCCAGGG
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
TTTGCTTTGTTTTTTTAAAGCACCTGTCTCTGTGTATATTTGAACAGCCT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 12 r 47777208 47790717 15 100.0 Perfect prediction

Features of the protein sequence	Description

Length: 430 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
EAW58044	2.8e-164	100.0	limb region 1 h...	Homo sapiens
EDL04155	3e-153	89.9	limb region 1 l...	Mus musculus
Q6UX01	5e-150	95.5	Protein LMBR1L;...	Homo sapiens
XP_509041	1.3e-149	95.0	lipocalin-inter...	Pan troglodytes
AAQ88935	1.3e-149	95.3	EAPD458 [Homo s...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method interpro_ID From To Entry Definition

FPrintScan IPR008075 107 129 PR01692 Lipocalin-1 receptor

IPR008075 149 171 PR01692 Lipocalin-1 receptor

IPR008075 229 250 PR01692 Lipocalin-1 receptor

IPR008075 336 357 PR01692 Lipocalin-1 receptor

IPR008075 394 414 PR01692 Lipocalin-1 receptor

HMMPfam IPR006876 62 430 PF04791 LMBR1-like conserved region

Search method	interpro_ID	From	To	Entry	Definition
FPrintScan	IPR008075	107	129	PR01692	Lipocalin-1 receptor
IPR008075	149	171	PR01692	Lipocalin-1 receptor
IPR008075	229	250	PR01692	Lipocalin-1 receptor
IPR008075	336	357	PR01692	Lipocalin-1 receptor
IPR008075	394	414	PR01692	Lipocalin-1 receptor
HMMPfam	IPR006876	62	430	PF04791	LMBR1-like conserved region

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 1 CEERPLGWVWVLGGGGFLPARP 22 SECONDARY 22

2 58 RECIISTLLFATLYILCHIFLTR 80 PRIMARY 23

3 104 LCTFTLAIALGAVLLLPFSIISN 126 PRIMARY 23

4 148 GLWNLVFLFSNLSLIFLMPFAYF 170 PRIMARY 23

5 191 TVVMLMLLTLLVLGMVWVASAIV 213 PRIMARY 23

6 237 CISFLGVLLLLVCTPLGLARMFS 259 PRIMARY 23

7 340 MLCLLVLTGLSVLIVAIHILELL 362 PRIMARY 23

8 383 SKLGSFGAVIQVVLILYPSGNPS 405 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	1	CEERPLGWVWVLGGGGFLPARP	22	SECONDARY	22
2	58	RECIISTLLFATLYILCHIFLTR	80	PRIMARY	23
3	104	LCTFTLAIALGAVLLLPFSIISN	126	PRIMARY	23
4	148	GLWNLVFLFSNLSLIFLMPFAYF	170	PRIMARY	23
5	191	TVVMLMLLTLLVLGMVWVASAIV	213	PRIMARY	23
6	237	CISFLGVLLLLVCTPLGLARMFS	259	PRIMARY	23
7	340	MLCLLVLTGLSVLIVAIHILELL	362	PRIMARY	23
8	383	SKLGSFGAVIQVVLILYPSGNPS	405	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: CTGAGCAGAGTATGGAAGCAC

Primer_r
: AAGATGTGGCAGAGGATGTAC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 12

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: AGGCTCGGGAGATAGATTGTC
Primer_r	: CCTATCCCCTTGGTCTTTCAG
PCR product length	: 104 bp
PCR conditions	: 95 °C15 sec64 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	1506 bp
Genome contig ID	gi89161190r_47677208
PolyA signal sequence (AATAAA,-19)	+--------+--------+----*----+---- GGCTTCAGCCATCAGCAATAAAGTTGATCCCAGGG
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* TTTGCTTTGTTTTTTTAAAGCACCTGTCTCTGTGTATATTTGAACAGCCT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	12	r	47777208	47790717	15	100.0	Perfect prediction

Primer_f	: CTGAGCAGAGTATGGAAGCAC
Primer_r	: AAGATGTGGCAGAGGATGTAC
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1174

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information