HUGE

Gene/Protein Characteristic Table for KIAA1030

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK05501
Accession No. :	AB028953
Description :	immunoglobulin superfamily, member 9B.
HUGO Gene Name :	immunoglobulin superfamily, member 9B (IGSF9B)
Clone Name :	fh00432 [Vector Info]
Source :	Human fetal brain

Features of the cloned DNA sequence	Description

Length: 5319 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 3027 bp

Genome contig ID gi51511727r_133190623
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
CTTCACTCCAGCCTGGGTGACAGAGATCCTGTCTC
Flanking genome sequence
(99773 - 99724)
----+----*----+----*----+----*----+----*----+----*
AAAAAAAAAAAAAAAAAAAAAAGAGAGAGAGAGAAGTAAGTTCCAGGCAA

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 11 r 133290396 133302069 8 99.4 Perfect prediction

Features of the protein sequence	Description

Length: 763 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
EAW67815	0	99.9	hCG2036598, iso...	Homo sapiens
Q9UPX0	0	99.9	Protein turtle ...	Homo sapiens
EAW67814	0	99.9	hCG2036598, iso...	Homo sapiens
XP_001087869	0	98.3	similar to immu...	Macaca mulatta
XP_001918095	1.2e-208	95.3	immunoglobulin ...	Equus caballus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB037776	4.8e-07	29.3	KIAA1355

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR003961 29 112 PF00041 Fibronectin

ProfileScan IPR003961 28 118 PS50853 Fibronectin

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR003961	29	112	PF00041	Fibronectin
ProfileScan	IPR003961	28	118	PS50853	Fibronectin

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 9 EVVTVNTLAFPITTPEPLVLVTP 31 SECONDARY 23

2 137 VLAGIVATICFLAAAILFSTLAA 159 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	9	EVVTVNTLAFPITTPEPLVLVTP	31	SECONDARY	23
2	137	VLAGIVATICFLAAAILFSTLAA	159	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: CCTCCATCGGTGTATAATCAG

Primer_r
: GCATATTTCCTTAGCTCAGCG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 11

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: CCTCCATCGGTGTATAATCAG
Primer_r	: GCATATTTCCTTAGCTCAGCG
PCR product length	: 157 bp
PCR conditions	: 95 °C15 sec62 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	3027 bp
Genome contig ID	gi51511727r_133190623
PolyA signal sequence (None)	+--------+--------+----*----+---- CTTCACTCCAGCCTGGGTGACAGAGATCCTGTCTC
Flanking genome sequence (99773 - 99724)	----+--------+--------+--------+--------+----* AAAAAAAAAAAAAAAAAAAAAAGAGAGAGAGAGAAGTAAGTTCCAGGCAA

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	11	r	133290396	133302069	8	99.4	Perfect prediction

Gene/Protein Characteristic Table for KIAA1030

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information