HUGE

Gene/Protein Characteristic Table for KIAA0995

Link to : GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK06296
Accession No. :	AB023212
Description :	Pecanex-like protein 1.
HUGO Gene Name :	pecanex homolog (Drosophila) (PCNX)
Clone Name :	hk07740 [Vector Info]
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 4410 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 1364 bp

Genome contig ID gi51511730f_70343875
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
ATTGCACCACTGTACTTCAGACAAGACTCTGTCTC
Flanking genome sequence
(205415 - 205464)
----+----*----+----*----+----*----+----*----+----*
AAAAAAAAAAAAAAAAAAAAGTGTATGAGAGAAGAAAATTAAAGGGCTTA

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 14 f 70443875 70549288 10 99.9 Perfect prediction

Features of the protein sequence	Description

Length: 1014 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
EAW81052	99.9	pecanex homolog...	Homo sapiens
EAW81055	99.9	pecanex homolog...	Homo sapiens
EAW81053	99.9	pecanex homolog...	Homo sapiens
AAK82958	99.9	pecanex-like pr...	Homo sapiens
Q96RV3	99.9	Pecanex-like pr...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB011125	0.0002	20.2	KIAA0553

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method interpro_ID From To Entry Definition

None - - - - -

Search method	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 80 LLLSGLLLLVCCLLLLLQQ 98 PRIMARY 19

2 130 GAGAGTAAAAAATAAAPGGDGVA 152 SECONDARY 23

3 181 RAAPLPVALLLGLPFTLYMALPS 203 PRIMARY 23

4 207 IVAVYCPVIAAVFIVLKMVNYRL 229 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	80	LLLSGLLLLVCCLLLLLQQ	98	PRIMARY	19
2	130	GAGAGTAAAAAATAAAPGGDGVA	152	SECONDARY	23
3	181	RAAPLPVALLLGLPFTLYMALPS	203	PRIMARY	23
4	207	IVAVYCPVIAAVFIVLKMVNYRL	229	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: GTGGGAAGAAATGAGAGTTGC

Primer_r
: TCGTTAGTGGCTTCTCTTCTC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 14

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: GTGGGAAGAAATGAGAGTTGC
Primer_r	: TCGTTAGTGGCTTCTCTTCTC
PCR product length	: 124 bp
PCR conditions	: 95 °C15 sec62 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	1364 bp
Genome contig ID	gi51511730f_70343875
PolyA signal sequence (None)	+--------+--------+----*----+---- ATTGCACCACTGTACTTCAGACAAGACTCTGTCTC
Flanking genome sequence (205415 - 205464)	----+--------+--------+--------+--------+----* AAAAAAAAAAAAAAAAAAAAGTGTATGAGAGAAGAAAATTAAAGGGCTTA

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	14	f	70443875	70549288	10	99.9	Perfect prediction

Gene/Protein Characteristic Table for KIAA0995

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information