HUGE

Gene/Protein Characteristic Table for KIAA0951

Link to : GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK05627
Accession No. :	AB023168
Description :
HUGO Gene Name :	neuroligin 4, Y-linked (NLGN4Y)
Clone Name :	hj05306 [Vector Info]
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 4935 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 2706 bp

Genome contig ID gi89161220f_15044026
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
AAATATCACACTATTTTCTAATGCTTTGTACAAAC
Flanking genome sequence
(421218 - 421267)
----+----*----+----*----+----*----+----*----+----*
AATTATGCATCTGTTCTTTCTTGGTAGGTGGAATATTTTATTTACTTTTG

Features of the protein sequence	Description

Length: 679 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
BAG58145	100.0	unnamed protein...	Homo sapiens
ACL51670	98.4	neuroligin 4 Y-...	Macaca mulatta
XP_001144796	98.2	similar to NLGN...	Pan troglodytes
XP_001144736	98.2	similar to NLGN...	Pan troglodytes
XP_520915	98.1	similar to NLGN...	Pan troglodytes

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB033086	0	98.8	KIAA1260
AB040913	3.9e-197	75.7	KIAA1480
AB028993	9.3e-116	75.0	KIAA1070
AB037787	1.3e-112	62.2	KIAA1366

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

FPrintScan IPR000460 299 313 PR01090 Neuroligin

IPR000460 402 423 PR01090 Neuroligin

IPR000460 432 450 PR01090 Neuroligin

IPR000460 532 561 PR01090 Neuroligin

HMMPfam IPR002018 1 453 PF00135 Carboxylesterase

Search method	interpro_ID	From	To	Entry	Definition
FPrintScan	IPR000460	299	313	PR01090	Neuroligin
IPR000460	402	423	PR01090	Neuroligin
IPR000460	432	450	PR01090	Neuroligin
IPR000460	532	561	PR01090	Neuroligin
HMMPfam	IPR002018	1	453	PF00135	Carboxylesterase

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 538 LSVTIAVGASLLFLNILAFAAL 559 PRIMARY 22

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	538	LSVTIAVGASLLFLNILAFAAL	559	PRIMARY	22

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: TTCTGCAAGCAATGTATGACC

Primer_r
: TAGACAGACAAAACCAGCATG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 6

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: TTCTGCAAGCAATGTATGACC
Primer_r	: TAGACAGACAAAACCAGCATG
PCR product length	: 103 bp
PCR conditions	: 95 °C15 sec62 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	2706 bp
Genome contig ID	gi89161220f_15044026
PolyA signal sequence (None)	+--------+--------+----*----+---- AAATATCACACTATTTTCTAATGCTTTGTACAAAC
Flanking genome sequence (421218 - 421267)	----+--------+--------+--------+--------+----* AATTATGCATCTGTTCTTTCTTGGTAGGTGGAATATTTTATTTACTTTTG

Gene/Protein Characteristic Table for KIAA0951

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information