HUGE

Gene/Protein Characteristic Table for KIAA0836

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK05297
Accession No. :	AB020643
Description :	D-glucuronyl C5-epimerase.
HUGO Gene Name :	glucuronic acid epimerase (GLCE)
Clone Name :	hj06165 [Vector Info]
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 4791 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 2960 bp

Genome contig ID gi51511731f_67235223
PolyA signal sequence
(AATAAA,-23)
+----*----+----*----+----*----+----
ATAAAACTGTAAAATAAAGTTTTTTTCTTAAAAAG
Flanking genome sequence
(116377 - 116426)
----+----*----+----*----+----*----+----*----+----*
AATATACCTGGATATTTCTCTTTCTTCTCAAATTATTCTAAGGTTATTTG

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 15 f 67335223 67351598 3 99.2 Perfect prediction

Features of the protein sequence	Description

Length: 609 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
O94923	100.0	D-glucuronyl C5...	Homo sapiens
AAT48654	99.8	glucuronyl C5-e...	Homo sapiens
XP_001085491	99.3	D-glucuronyl C5...	Macaca mulatta
XP_852992	97.5	similar to D-gl...	Canis lupus fam...
O18756	97.0	D-glucuronyl C5...	Bos taurus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR010598 408 599 PF06662 D-glucuronyl C5-epimerase

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR010598	408	599	PF06662	D-glucuronyl C5-epimerase

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 4 TLIIICALFTLVTVLLWNKCSSD 26 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	4	TLIIICALFTLVTVLLWNKCSSD	26	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: TCATACGTCTGCTTTGTTTGC

Primer_r
: GGAAGGCAGTGTAAAACCAAC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 15

Experimental conditions

Panel name	: UniGene
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	2960 bp
Genome contig ID	gi51511731f_67235223
PolyA signal sequence (AATAAA,-23)	+--------+--------+----*----+---- ATAAAACTGTAAAATAAAGTTTTTTTCTTAAAAAG
Flanking genome sequence (116377 - 116426)	----+--------+--------+--------+--------+----* AATATACCTGGATATTTCTCTTTCTTCTCAAATTATTCTAAGGTTATTTG

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	15	f	67335223	67351598	3	99.2	Perfect prediction

Primer_f	: TCATACGTCTGCTTTGTTTGC
Primer_r	: GGAAGGCAGTGTAAAACCAAC
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA0836

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information