HUGE

Gene/Protein Characteristic Table for KIAA0574

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK05612
Accession No. :	AB011146
Description :
HUGO Gene Name :
Clone Name :	hj00204 [Vector Info]
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 4305 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 3085 bp

Genome contig ID gi51511731r_27099749
PolyA signal sequence
(AATAAA,-21)
+----*----+----*----+----*----+----
ATGATCCGTGTTTTAATAAAAAGAAGTATTTCTGG
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
CCTCTGTGTCTCTGAGGTCTAACTGGGACAGAGGCAGGCTGAGAGGCTGT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 15 r 27199749 27276047 8 99.1 Perfect prediction

Features of the protein sequence	Description

Length: 405 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
EAW51514	1.1e-117	100.0	hCG27623 [Homo ...	Homo sapiens
NP_056122	7.1e-117	99.5	hypothetical pr...	Homo sapiens
XP_001115936	8.5e-109	93.6	hypothetical pr...	Macaca mulatta
AAI21477	2.8e-46	49.1	Hypothetical pr...	Xenopus (Silura...
XP_413772	1.2e-44	48.3	hypothetical pr...	Gallus gallus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

None - - - - -

Search method	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 43 LFSVCALNVLSTIVCALATAMCC 65 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	43	LFSVCALNVLSTIVCALATAMCC	65	PRIMARY	23

Expression profile	Description

: RT-PCR Description

Experimental conditions

Primer_f
: TGTGTAGCGAGCTTTCTGTGG

Primer_r
: CTATGGCAAGCAAGATCGCAG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR	Description

RH mapping information	Description

Chromosome No.

: 15

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: TGTGTAGCGAGCTTTCTGTGG
Primer_r	: CTATGGCAAGCAAGATCGCAG
PCR product length	: 125 bp
PCR conditions	: 95 °C15 sec64 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	3085 bp
Genome contig ID	gi51511731r_27099749
PolyA signal sequence (AATAAA,-21)	+--------+--------+----*----+---- ATGATCCGTGTTTTAATAAAAAGAAGTATTTCTGG
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* CCTCTGTGTCTCTGAGGTCTAACTGGGACAGAGGCAGGCTGAGAGGCTGT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	15	r	27199749	27276047	8	99.1	Perfect prediction

Gene/Protein Characteristic Table for KIAA0574

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information