HUGE

Gene/Protein Characteristic Table for KIAA0268

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK05980
Accession No. :	D87742
Description :	Melanoma inhibitory activity protein 3 precursor.
HUGO Gene Name :	melanoma inhibitory activity family, member 3 (MIA3)
Clone Name :	ha07061 [Vector Info]
Source :	Myeloblast cell line (KG-1)

Features of the cloned DNA sequence	Description

Length: 5976 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 2394 bp

Genome contig ID gi89161185f_220769328
PolyA signal sequence
(ATTAAA,-20)
+----*----+----*----+----*----+----
TATATTCAGGTCTGAATTAAAGTTAAGTTAATCAC
Flanking genome sequence
(138645 - 138694)
----+----*----+----*----+----*----+----*----+----*
ACAGTGTTCAATTTAAGCTTCTTTAATGTTGATGAAAGGTATTTGTAGTT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 1 f 220869328 220907971 25 99.4 Perfect prediction

Features of the protein sequence	Description

Length: 1193 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
EAW93268	99.9	hCG25333, isofo...	Homo sapiens
Q5JRA6	99.9	Melanoma inhibi...	Homo sapiens
XP_001100730	92.6	similar to mela...	Macaca mulatta
XP_514216	90.2	melanoma inhibi...	Pan troglodytes
XP_536152	79.3	similar to mela...	Canis lupus fam...

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

None - - - - -

Search method	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 429 ENAILLIYSFMFYLTKSLVATLP 451 SECONDARY 23

2 469 FITAFLGIASFAIFLWRTVLVVK 491 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	429	ENAILLIYSFMFYLTKSLVATLP	451	SECONDARY	23
2	469	FITAFLGIASFAIFLWRTVLVVK	491	PRIMARY	23

Expression profile	Description

: Northern blot Description

Northern blot	Description

RH mapping information	Description

Chromosome No.

: 1

Experimental conditions

Panel name	: Genebridge 4
Primer_f	: ATCATCCCTCAGCCAAATCAC
Primer_r	: ACACAGAATATACCACATCCC
PCR product length	: 234 bp
PCR conditions	: 95 °C15 sec62 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	2394 bp
Genome contig ID	gi89161185f_220769328
PolyA signal sequence (ATTAAA,-20)	+--------+--------+----*----+---- TATATTCAGGTCTGAATTAAAGTTAAGTTAATCAC
Flanking genome sequence (138645 - 138694)	----+--------+--------+--------+--------+----* ACAGTGTTCAATTTAAGCTTCTTTAATGTTGATGAAAGGTATTTGTAGTT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	1	f	220869328	220907971	25	99.4	Perfect prediction

Gene/Protein Characteristic Table for KIAA0268

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information