HUGE

Gene/Protein Characteristic Table for KIAA0241

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK05586
Accession No. :	D87682
Description :	K0241_HUMAN Isoform 2 of Q8NBF6 - Homo sapiens.
HUGO Gene Name :
Clone Name :	ha04847 [Vector Info]
Source :	Myeloblast cell line (KG-1)

Features of the cloned DNA sequence	Description

Length: 6371 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 4802 bp

Genome contig ID gi89161213f_32450829
PolyA signal sequence
(AATAAA,-26)
+----*----+----*----+----*----+----
ATAAATGAGAATAAAATGATCCTGTTCACCCTGCC
Flanking genome sequence
(144021 - 144070)
----+----*----+----*----+----*----+----*----+----*
TACAGTTGGACTTGACCTGTCCTAGAAGTACCCTGTGTGTTGTCCATGTG

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 7 f 32550824 32594848 12 99.1 Perfect prediction

Features of the protein sequence	Description

Length: 522 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
XP_001082573	4e-181	87.9	similar to CG11...	Macaca mulatta
XP_539507	2.4e-170	81.9	similar to CG11...	Canis lupus fam...
XP_132538	3.9e-165	81.0	hypothetical pr...	Mus musculus
EDL88053	1.4e-164	80.9	rCG52383 [Rattu...	Rattus norvegicus
EDL04714	4.6e-157	90.3	mCG13107 [Mus m...	Mus musculus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method interpro_ID From To Entry Definition

None - - - - -

Search method	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 134 KVLFYISPVNKLVGALMTVLSLF 156 PRIMARY 23

2 438 AQFAVYIHALLAATLQLVLFRIV 460 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	134	KVLFYISPVNKLVGALMTVLSLF	156	PRIMARY	23
2	438	AQFAVYIHALLAATLQLVLFRIV	460	PRIMARY	23

Expression profile	Description

: Northern blot Description

Northern blot	Description

RH mapping information	Description

Chromosome No.

: 7

Experimental conditions

Panel name	: Genebridge 4
Primer_f	: GTGAAGGCATTTAGTGGTTAC
Primer_r	: TACCAGAGCAAAGAGAACTAC
PCR product length	: 165 bp
PCR conditions	: 95 °C15 sec60 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	4802 bp
Genome contig ID	gi89161213f_32450829
PolyA signal sequence (AATAAA,-26)	+--------+--------+----*----+---- ATAAATGAGAATAAAATGATCCTGTTCACCCTGCC
Flanking genome sequence (144021 - 144070)	----+--------+--------+--------+--------+----* TACAGTTGGACTTGACCTGTCCTAGAAGTACCCTGTGTGTTGTCCATGTG

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	7	f	32550824	32594848	12	99.1	Perfect prediction

Gene/Protein Characteristic Table for KIAA0241

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information