HUGE

Gene/Protein Characteristic Table for KIAA0040

Link to : GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK05581
Accession No. :	D25539
Description :
HUGO Gene Name :
Clone Name :	ha01160 [Vector Info]
Source :	Myeloblast cell line (KG-1)

Features of the cloned DNA sequence	Description

Length: 4460 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 3183 bp

Genome contig ID gi89161185r_173292867
PolyA signal sequence
(AATAAA,-25)
+----*----+----*----+----*----+----
ATTGCAATGAAATAAAATTAAAGGTATACTAGCTC
Flanking genome sequence
(99879 - 99830)
----+----*----+----*----+----*----+----*----+----*
AGCTATGTCTGCCATATTTCTTTTTTCTTTTTTTTTTTTTTTTTTTTTTG

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 1 r 173392746 173428456 4 99.1 Perfect prediction

Features of the protein sequence	Description

Length: 164 aa
Result of homology search against nr database (FASTA output)
No significant homologues
Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

None - - - - -

Search method	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 44 QFLDTVLAAMCPIAMLLTADPGM 66 SECONDARY 23

2 107 SRYVGKYILLIKWSLAMYFVQGS 129 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	44	QFLDTVLAAMCPIAMLLTADPGM	66	SECONDARY	23
2	107	SRYVGKYILLIKWSLAMYFVQGS	129	PRIMARY	23

Expression profile	Description

: Northern blot Description

Northern blot	Description

RH mapping information	Description

Chromosome No.

: 1

Experimental conditions

Panel name	: Stanford G3
Primer_f	: CTTTTGTGTGTGTTCGAA
Primer_r	: CTTTCCCCATTGCTCCTT
PCR product length	: 178 bp
PCR conditions	: 95 °C15 sec54 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	3183 bp
Genome contig ID	gi89161185r_173292867
PolyA signal sequence (AATAAA,-25)	+--------+--------+----*----+---- ATTGCAATGAAATAAAATTAAAGGTATACTAGCTC
Flanking genome sequence (99879 - 99830)	----+--------+--------+--------+--------+----* AGCTATGTCTGCCATATTTCTTTTTTCTTTTTTTTTTTTTTTTTTTTTTG

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	1	r	173392746	173428456	4	99.1	Perfect prediction

Gene/Protein Characteristic Table for KIAA0040

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information