• NEDO
  Top page Gene List

Gene/Protein Characteristic Table for FLJ00172

Order Kazusa clone(s) from : Japan || Other countries

Product ID	ORK05102
Accession No	AK074101
Clone name	sj00125
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
cDNA sequence	DNA sequence (4421 bp) Predicted protein sequence (1125 aa)
Source	Human spleen

Length: 4421 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

Length: 1125 aa
Result of homology search against nr database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other entries from Kazusa human cDNA project (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR003343	309	390	PF02368	Bacterial Ig-like

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	719	ELSGAMVVGDVLCLATVLTSLEG	741	PRIMARY	23
	2	760	TGVAVARAVGSVTVYYEVAGHLR	782	SECONDARY	23

Experimental conditions

Order Kazusa clone(s) from : Japan || Other countries
Back to the NEDO Protein Database homepage
Send a message to office AT kazusa.or.jp