Gene/Protein Characteristic Table for KIAA0906
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Product ID ORK06211
Accession No AB020713
Description nucleoporin 210kDa
Clone name hk10347
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (4217 bp)
Predicted protein sequence (923 aa)
Source Human adult brain
Rouge ID mKIAA0906 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 4217 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Integrity of 3' end
Length of 3'UTR 1444 bp
Genome contig ID gi89161205r_13232737
PolyA signal sequence
(AATAAA,-23)
+----*----+----*----+----*----+----
ACTGGTTTATTTAATAAAGTTCTATGTGATTTTTT
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AAGAGGGTGTGATCGTTGCTGAGATTTCTGTCTGATGGTGATGATTTCTT

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 3 r 13332737 13359747 20 99.5 Perfect prediction
Features of the protein sequence
Description

Length: 923 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
BAG10397 0 99.9 nucleoporin 210...
synthetic construct
BAB84927 0 99.8 FLJ00172 protei...
Homo sapiens
EAW64151 0 99.8 nucleoporin 210...
Homo sapiens
Q8TEM1 0 99.8 Nuclear pore me...
Homo sapiens
EAW64152 0 99.8 nucleoporin 210...
Homo sapiens
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR003343 113 188 PF02368 Bacterial Ig-like
HMMSmart IPR003343 113 188 SM00635 Bacterial Ig-like

Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length
SOSUI2 1 1 FPAPAKAVVYVSDIQELYIRVVD 23 SECONDARY 23
2 517 ELSGAMVVGDVLCLATVLTSLEG 539 PRIMARY 23
3 558 TGVAVARAVGSVTVYYEVAGHLR 580 SECONDARY 23
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f GAAAATGTCCTTGAGATGGCA
Primer_r TGATAAGCTGCCATGAAAGTG
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 3
Experimental conditions
Panel name UniGene
Primer_f -
Primer_r -
PCR product length -
PCR conditions -
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