Gene/Protein Characteristic Table for KIAA1747
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Product ID ORK00276
Accession No AB051534
Description bone morphogenetic protein/retinoic acid inducible neural-specific 2
Clone name pj02023
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (3654 bp)
Predicted protein sequence (791 aa)
Flexi ORF Clone FXC00276
Source Human brain (hippocampus)
Rouge ID mKIAA1747 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 3654 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning No warning
Integrity of 3' end
Length of 3'UTR 888 bp
Genome contig ID gi89161185f_175307154
PolyA signal sequence
(AGTAAA,-20)
+----*----+----*----+----*----+----
CCACCTGAACATCTAAGTAAACATTTATCTGGTTT
Flanking genome sequence
(211023 - 211072)
----+----*----+----*----+----*----+----*----+----*
AATATATTTTTGGAAAAGGCCTTTTTTAGGGGGAAAAATGAGAGAAAAAA

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 1 f 175407154 175518175 8 99.4 Perfect prediction
Features of the protein sequence
Description

Length: 791 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
Q9C0B6 0 100.0 Protein FAM5B; ...
Homo sapiens
XP_001153444 0 99.7 BMP/retinoic ac...
Pan troglodytes
XP_001105463 0 99.6 similar to BMP/...
Macaca mulatta
CAA22893 0 100.0 hypothetical pr...
Homo sapiens
Q5RDR5 0 99.2 Protein FAM5B; ...
Pongo abelii
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR001862 144 182 PF01823 Membrane attack complex component/perforin/complement C9
HMMSmart IPR001862 97 289 SM00457 Membrane attack complex component/perforin/complement C9

Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length
SOSUI2 1 24 VAPWTALLALGLPGWVLAVSATA 46 PRIMARY 23
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f TCCTTTCCAACAGCATCTCTC
Primer_r CTTAGATGTTCAGGTGGTTGG
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 1
Experimental conditions
Panel name unigene
Primer_f -
Primer_r -
PCR product length -
PCR conditions -
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