Gene/Protein Characteristic Table for KIAA0976
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Product ID ORK00705
Accession No AB023193
Description netrin G1
Clone name hj06950
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (4704 bp)
Predicted protein sequence (386 aa)
Flexi ORF Clone FXC00705
Source Human adult brain
Rouge ID mKIAA0976 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 4704 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning No warning
Integrity of 3' end
Length of 3'UTR 2870 bp
Genome contig ID gi89161185f_107385072
PolyA signal sequence
(AATAAA,-19)
+----*----+----*----+----*----+----
AATTAATGAATCCCAAAATAAATCTGTAGCCTTTG
Flanking genome sequence
(369660 - 369709)
----+----*----+----*----+----*----+----*----+----*
AGCCTTATGATCTATGTTTTCACTTTACCTGATGTGGTAGGAATTCCTTC

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 1 f 107485072 107754730 5 99.4 Perfect prediction
Features of the protein sequence
Description

Length: 386 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
CAH73828 8.8e-166 100.0 netrin G1 [Homo...
Homo sapiens
CAD98143 8.8e-166 100.0 hypothetical pr...
Homo sapiens
AAH30220 4.1e-165 99.7 Netrin G1 [Homo...
Homo sapiens
CAH73833 5e-165 99.7 netrin G1 [Homo...
Homo sapiens
CAH73829 5.1e-165 99.7 netrin G1 [Homo...
Homo sapiens
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB058760 1.3e-84 57.5 KIAA1857
AB067494 4.5e-11 29.7 KIAA1907
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR008211 72 317 PF00055 Laminin
IPR002049 319 363 PF00053 EGF-like
HMMSmart IPR008211 81 317 SM00136 Laminin
IPR002049 319 376 SM00180 EGF-like
ProfileScan IPR008211 68 318 PS51117 Laminin
ScanRegExp IPR013032 337 348 PS00022 EGF-like region
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f AAATGCATGGATAGGGTGGTC
Primer_r AGATAGACAACAGCAGGTACG
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 1
Experimental conditions
Panel name GeneBridge 4
Primer_f AAATGCATGGATAGGGTGGTC
Primer_r AGATAGACAACAGCAGGTACG
PCR product length 100 bp
PCR conditions 95 °C15 sec62 °C60 sec30 cycles
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