Gene/Protein Characteristic Table for KIAA0181
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Product ID ORK00447
Accession No D80003
Description nuclear receptor coactivator 6, transcript variant 1
Clone name ha02522s1
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (6813 bp)
Predicted protein sequence (2079 aa)
Flexi ORF Clone FXC00447
Source Myeloblast cell line (KG-1)
Rouge ID mKIAA0181 by Kazusa Mouse cDNA Project
Note We replaced ha02522, former representative clones for KIAA0181 with ha02522s1. (2002/5/10)
Features of the cloned cDNA sequence
Description

Length: 6813 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning No warning
Integrity of 3' end
Length of 3'UTR 484 bp
Genome contig ID gi51511747r_32666300
PolyA signal sequence
(AATAAA,-32)
+----*----+----*----+----*----+----
GTGAATAAAGAGAATCTAAGGATTTGTACAATGTG
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AAATAACGTGTTAAATAAATGTCATTGTCATAGAACATAAAGTTATGTTA

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 20 r 32766300 32844001 14 99.7 Perfect prediction
Features of the protein sequence
Description

Length: 2079 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
AAF13595 0 100.0 cancer-amplifie...
Homo sapiens
Q14686 0 100.0 Nuclear recepto...
Homo sapiens
XP_001160316 0 99.3 nuclear recepto...
Pan troglodytes
XP_001103488 0 98.5 similar to nucl...
Macaca mulatta
AAF16403 0 99.9 transcriptional...
Homo sapiens
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB058722 0.00029 25.2 KIAA1819
AB058719 0.001 25.1 KIAA1816
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
None - - - - -

Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length
SOSUI2 1 2 FLIVLLAYASGIIFTMVLDDLPN 24 PRIMARY 23
Expression profile
Description

Northern blot
Experimental conditions
Primer_f
Primer_r
PCR conditions test

RH mapping information
Description

Chromosome No. 20
Experimental conditions
Panel name Genebridge 4
Primer_f TTTCACATTTCCTAAGCAGCC
Primer_r TTGCTTTTGCCCCCACTACTG
PCR product length 110 bp
PCR conditions 95 °C15 sec66 °C60 sec30 cycles
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