Gene/Protein Characteristic Table for KIAA0076
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Product ID ORK00397
Accession No D38548
Description cullin 7, transcript variant 2
Clone name ha00936
Vector information
The cDNA fragment was inserted at the EcoRV-NotI site of the ...
cDNA sequence DNA sequence (5253 bp)
Predicted protein sequence (1701 aa)
Flexi ORF Clone FXC00397
Source Myeloblast cell line (KG-1)
Rouge ID mKIAA0076 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 5253 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning No warning
Integrity of 3' end
Length of 3'UTR 70 bp
Genome contig ID gi89161210r_43013334
PolyA signal sequence
(ATTAAA,-23)
+----*----+----*----+----*----+----
GCTTTTACAGAAATTAAACCCAAGAGTTTGATTAT
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
ATGACGTGTGTGTTTGGCGACTGCTAGAGATTTGAGTGGGGAGGTGGGAG

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 6 r 43113334 43129415 26 99.7 Perfect prediction
Features of the protein sequence
Description

Length: 1701 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
AAH33647 0 100.0 Cullin 7 [Homo ...
Homo sapiens
Q14999 0 99.9 Cullin-7; Short...
Homo sapiens
BAF85495 0 99.9 unnamed protein...
Homo sapiens
XP_001136655 0 99.6 cullin 7 [Pan t...
Pan troglodytes
XP_001088003 0 97.2 cullin 7 [Macac...
Macaca mulatta
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB014608 5.1e-181 62.2 KIAA0708
AB007859 4.7e-12 42.4 KIAA0399
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR004939 815 997 PF03256 Anaphase-promoting complex subunit 10
IPR001373 1046 1548 PF00888 Cullin
ProfileScan IPR001373 1218 1509 PS50069 Cullin
Expression profile
Description

Northern blot
Experimental conditions
Primer_f
Primer_r
PCR conditions test

RH mapping information
Description

Chromosome No. 6
Experimental conditions
Panel name Genebridge 4
Primer_f TTTGGTCAGCAGCCTTGGTAA
Primer_r ATCTGTAGGGTATGGAAGGTG
PCR product length 219 bp
PCR conditions 95 °C15 sec65 °C120 sec32 cycles
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