Gene/Protein Characteristic Table for KIAA1427
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Product ID ORK00829
Accession No AB037848
Description synaptotagmin XIII, transcript variant 1
Clone name fh02770
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (5145 bp)
Predicted protein sequence (439 aa)
Flexi ORF Clone FXC00829
Source Human fetal brain
Rouge ID mKIAA1427 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 5145 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning No warning
Integrity of 3' end
Length of 3'UTR 3752 bp
Genome contig ID gi51511727r_45118428
PolyA signal sequence
(AATAAA,-22)
+----*----+----*----+----*----+----
CCTTGCAGTGGTAAATAAAAAATTTCCAACAGGGT
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
CAGCTGCCTGGTGTTTTCTTTTTTTCCGTTTTACCTAATATTTTGGCATA

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 11 r 45218428 45264446 6 99.2 Perfect prediction
Features of the protein sequence
Description

Length: 439 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
XP_001104396 6.4e-176 98.2 similar to syna...
Macaca mulatta
Q7L8C5 2.5e-175 100.0 Synaptotagmin-1...
Homo sapiens
XP_521898 1.5e-174 99.5 hypothetical pr...
Pan troglodytes
XP_540764 3.9e-163 91.1 similar to syna...
Canis lupus fam...
AAI40519 1.5e-161 92.3 SYT13 protein [...
Bos taurus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
D38522 2.1e-15 25.7 KIAA0080
AB037763 2.6e-14 26.1 KIAA1342
AB023202 4.4e-06 23.9 KIAA0985
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR000008 202 272 PF00168 C2 calcium-dependent membrane targeting
IPR000008 317 407 PF00168 C2 calcium-dependent membrane targeting
HMMSmart IPR000008 316 432 SM00239 C2 calcium-dependent membrane targeting
ProfileScan IPR000008 314 407 PS50004 C2 calcium-dependent membrane targeting
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f ATGGATTCTGCCTTTGGACCC
Primer_r ATAAGGCTCCTGCTCAGATTC
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 11
Experimental conditions
Panel name unigene
Primer_f -
Primer_r -
PCR product length -
PCR conditions -
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