Gene/Protein Characteristic Table for KIAA1980
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Product ID ORK07238
Accession No AB075860
Description tetratricopeptide repeat domain 14
Clone name fj10323s1
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (2419 bp)
Predicted protein sequence (660 aa)
Source Human fetal brain
Rouge ID mKIAA1980 by Kazusa Mouse cDNA Project
Note We replaced fj10323, former representative clones for KIAA1980 with fj10323s1. (2002/12/27)
Features of the cloned cDNA sequence

Length: 2419 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Integrity of 3' end
Length of 3'UTR 436 bp
Genome contig ID gi89161205f_181703650
PolyA signal sequence
Flanking genome sequence
(107812 - 107861)

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class
Ensembl gnome browser 3 f 181803650 181811460 10 100.0 Perfect prediction
Features of the protein sequence

Length: 660 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
Q96N46 2.6e-209 100.0 Tetratricopepti...
Homo sapiens
XP_001495821 1.7e-195 93.7 tetratricopepti...
Equus caballus
XP_001927220 9.8e-191 92.3 tetratricopepti...
Sus scrofa
XP_535814 1.6e-185 90.0 similar to tetr...
Canis lupus fam...
XP_848442 1.6e-185 90.0 similar to tetr...
Canis lupus fam...
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR013105 197 230 PF07719 Tetratricopeptide TPR_2
IPR001440 231 264 PF00515 Tetratricopeptide TPR_1
IPR001440 272 305 PF00515 Tetratricopeptide TPR_1
HMMSmart IPR013026 197 230 SM00028 Tetratricopeptide region
IPR013026 231 264 SM00028 Tetratricopeptide region
IPR013026 272 305 SM00028 Tetratricopeptide region
ProfileScan IPR003029 16 98 PS50126 S1
IPR013026 197 230 PS50005 Tetratricopeptide region
IPR013026 197 305 PS50293 Tetratricopeptide region
IPR013026 231 264 PS50005 Tetratricopeptide region
IPR013026 272 305 PS50005 Tetratricopeptide region
Expression profile

Experimental conditions
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information

Chromosome No. 3
Experimental conditions
Panel name genbank
Primer_f -
Primer_r -
PCR product length -
PCR conditions -
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