hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-18144382/chunk_1/iprscan-20080502-18144382.nocrc
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Query sequence: KIAA1980
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00028                                                  62.9      4e-14   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00028    1/3     197   230 ..     1    34 []    18.7     0.83
SM00028    2/3     231   264 ..     1    34 []    26.9   0.0028
SM00028    3/3     272   305 ..     1    34 []    17.3      2.1

Alignments of top-scoring domains:
SM00028: domain 1 of 3, from 197 to 230: score 18.7, E = 0.83
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      a  +  +G+ y+k g++ +A++ y+kALe+d +n   
    KIAA1980   197    ALKCVKIGVDYFKVGRHVDAMNEYNKALEIDKQN    230  

SM00028: domain 2 of 3, from 231 to 264: score 26.9, E = 0.0028
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      +eal  +G +y  +g +++Aie++e ALe  P++   
    KIAA1980   231    VEALVARGALYATKGSLNKAIEDFELALENCPTH    264  

SM00028: domain 3 of 3, from 272 to 305: score 17.3, E = 2.1
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                       ++l  +G  ++  +++  A+ yy+kAL+ld+++   
    KIAA1980   272    CQTLVERGGQLEEEEKFLNAESYYKKALALDETF    305  

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