Gene/Protein Characteristic Table for KIAA1589
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Product ID ORK00873
Accession No AB046809
Description zinc finger, FYVE domain containing 1, transcript variant 1
Clone name fj08951
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (4310 bp)
Predicted protein sequence (816 aa)
Flexi ORF Clone FXC00873
Source Human fetal brain
Rouge ID mKIAA1589 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 4310 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning No warning
Integrity of 3' end
Length of 3'UTR 1430 bp
Genome contig ID gi51511730r_72405913
PolyA signal sequence
(CATAAA,-19)
+----*----+----*----+----*----+----
CCATCCAATTCGCCATCATAAAGGAATCTTCCTGC
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
ATCTCGACTGTGCTGGCTCTTTCCTCTCATTCCATCAGTGCCTTCCAGCC

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 14 r 72505913 72563498 12 99.8 Perfect prediction
Features of the protein sequence
Description

Length: 816 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
Q9HBF4 0 100.0 Zinc finger FYV...
Homo sapiens
XP_522899 0 99.6 zinc finger, FY...
Pan troglodytes
Q5RFL4 0 99.5 Zinc finger FYV...
Pongo abelii
XP_547890 0 96.9 similar to Zinc...
Canis lupus fam...
XP_001488809 0 97.0 similar to zinc...
Equus caballus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB040970 6.5e-07 36.1 KIAA1537
AB046863 1.4e-06 38.8 KIAA1643
AB014547 2.9e-06 45.8 KIAA0647
AB002369 5.7e-06 44.1 KIAA0371
AB037783 4.8e-05 27.7 KIAA1362
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR000306 632 699 PF01363 Zinc finger
IPR000306 749 815 PF01363 Zinc finger
HMMSmart IPR000306 629 699 SM00064 Zinc finger
IPR000306 746 815 SM00064 Zinc finger
ProfileScan IPR000306 637 698 PS50178 Zinc finger
IPR000306 754 814 PS50178 Zinc finger
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f AATCATGGGAAGGAAGGAGTG
Primer_r GGAAGCAGATGTTTTGGGCAC
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 14
Experimental conditions
Panel name CCR
Primer_f TTTAGGGAAGTATATGGCGGT
Primer_r GGATGGTACACAGTTCTAGAG
PCR product length 142 bp
PCR conditions 95 °C15 sec62 °C60 sec30 cycles
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